Protein–RNA interactions for Protein: O43868

SLC28A2, Sodium/nucleoside cotransporter 2, humanhuman

Predictions only

Length 658 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A2O43868 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SLC28A2O43868 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
SLC28A2O43868 AC004870.1-201ENST00000315132 882 ntBASIC17.91■□□□□ 0.46
SLC28A2O43868 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SLC28A2O43868 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SLC28A2O43868 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC17.91■□□□□ 0.46
SLC28A2O43868 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
SLC28A2O43868 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC17.91■□□□□ 0.46
SLC28A2O43868 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC17.91■□□□□ 0.46
SLC28A2O43868 CD81-212ENST00000526072 1172 ntTSL 5 BASIC17.91■□□□□ 0.46
SLC28A2O43868 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC17.91■□□□□ 0.46
SLC28A2O43868 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC17.91■□□□□ 0.46
SLC28A2O43868 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC17.91■□□□□ 0.46
SLC28A2O43868 AC140113.3-201ENST00000605663 199 ntBASIC17.91■□□□□ 0.46
SLC28A2O43868 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SLC28A2O43868 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SLC28A2O43868 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC17.91■□□□□ 0.46
SLC28A2O43868 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SLC28A2O43868 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SLC28A2O43868 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SLC28A2O43868 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
SLC28A2O43868 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SLC28A2O43868 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC17.91■□□□□ 0.46
SLC28A2O43868 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SLC28A2O43868 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SLC28A2O43868 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
SLC28A2O43868 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
SLC28A2O43868 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SLC28A2O43868 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SLC28A2O43868 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SLC28A2O43868 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SLC28A2O43868 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SLC28A2O43868 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SLC28A2O43868 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SLC28A2O43868 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SLC28A2O43868 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SLC28A2O43868 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SLC28A2O43868 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SLC28A2O43868 PRELID1P1-202ENST00000567272 903 ntBASIC17.9■□□□□ 0.46
SLC28A2O43868 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC17.9■□□□□ 0.46
SLC28A2O43868 CR769767.2-201ENST00000622735 460 ntBASIC17.9■□□□□ 0.46
SLC28A2O43868 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
SLC28A2O43868 MCC-208ENST00000514701 2855 ntTSL 2 BASIC17.9■□□□□ 0.46
SLC28A2O43868 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
SLC28A2O43868 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
SLC28A2O43868 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
SLC28A2O43868 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.9■□□□□ 0.46
SLC28A2O43868 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SLC28A2O43868 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SLC28A2O43868 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SLC28A2O43868 CROCCP3-202ENST00000420820 1947 ntBASIC17.9■□□□□ 0.46
SLC28A2O43868 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SLC28A2O43868 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SLC28A2O43868 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
SLC28A2O43868 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
SLC28A2O43868 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
SLC28A2O43868 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.46
SLC28A2O43868 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC17.89■□□□□ 0.45
SLC28A2O43868 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
SLC28A2O43868 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SLC28A2O43868 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SLC28A2O43868 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SLC28A2O43868 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
SLC28A2O43868 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC17.89■□□□□ 0.45
SLC28A2O43868 AL845331.1-201ENST00000424978 1190 ntBASIC17.89■□□□□ 0.45
SLC28A2O43868 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC17.89■□□□□ 0.45
SLC28A2O43868 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC17.89■□□□□ 0.45
SLC28A2O43868 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC17.89■□□□□ 0.45
SLC28A2O43868 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SLC28A2O43868 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SLC28A2O43868 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC17.89■□□□□ 0.45
SLC28A2O43868 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SLC28A2O43868 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
SLC28A2O43868 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SLC28A2O43868 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SLC28A2O43868 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
SLC28A2O43868 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SLC28A2O43868 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SLC28A2O43868 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SLC28A2O43868 KRT8P10-201ENST00000450021 1447 ntBASIC17.89■□□□□ 0.45
SLC28A2O43868 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC17.89■□□□□ 0.45
SLC28A2O43868 IRX1P1-201ENST00000438849 1838 ntBASIC17.88■□□□□ 0.45
SLC28A2O43868 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC17.88■□□□□ 0.45
SLC28A2O43868 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC17.88■□□□□ 0.45
SLC28A2O43868 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
SLC28A2O43868 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SLC28A2O43868 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SLC28A2O43868 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC17.88■□□□□ 0.45
SLC28A2O43868 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
SLC28A2O43868 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
SLC28A2O43868 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SLC28A2O43868 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SLC28A2O43868 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC17.88■□□□□ 0.45
SLC28A2O43868 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC17.88■□□□□ 0.45
SLC28A2O43868 FP475955.4-201ENST00000623131 1990 ntBASIC17.88■□□□□ 0.45
SLC28A2O43868 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
SLC28A2O43868 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SLC28A2O43868 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SLC28A2O43868 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SLC28A2O43868 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms