Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC20.85■□□□□ 0.93
MSH4O15457 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC20.85■□□□□ 0.93
MSH4O15457 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
MSH4O15457 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MSH4O15457 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
MSH4O15457 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MSH4O15457 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
MSH4O15457 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
MSH4O15457 AL391807.1-203ENST00000604392 2365 ntBASIC20.85■□□□□ 0.93
MSH4O15457 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
MSH4O15457 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MSH4O15457 AC005082.1-201ENST00000413042 2259 ntBASIC20.84■□□□□ 0.93
MSH4O15457 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC20.84■□□□□ 0.93
MSH4O15457 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MSH4O15457 AC120498.9-201ENST00000339021 3867 ntBASIC20.84■□□□□ 0.93
MSH4O15457 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
MSH4O15457 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
MSH4O15457 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC20.84■□□□□ 0.93
MSH4O15457 HLA-F-220ENST00000434407 884 ntBASIC20.84■□□□□ 0.93
MSH4O15457 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC20.84■□□□□ 0.93
MSH4O15457 FAM86EP-206ENST00000510506 987 ntBASIC20.84■□□□□ 0.93
MSH4O15457 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC20.84■□□□□ 0.93
MSH4O15457 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC20.84■□□□□ 0.93
MSH4O15457 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC20.84■□□□□ 0.93
MSH4O15457 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC20.84■□□□□ 0.93
MSH4O15457 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
MSH4O15457 AL121956.5-201ENST00000625261 221 ntBASIC20.84■□□□□ 0.93
MSH4O15457 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MSH4O15457 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
MSH4O15457 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MSH4O15457 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
MSH4O15457 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
MSH4O15457 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MSH4O15457 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MSH4O15457 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
MSH4O15457 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC20.83■□□□□ 0.93
MSH4O15457 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.93
MSH4O15457 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC20.83■□□□□ 0.93
MSH4O15457 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
MSH4O15457 VENTXP5-201ENST00000523979 775 ntBASIC20.83■□□□□ 0.93
MSH4O15457 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC20.83■□□□□ 0.93
MSH4O15457 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC20.83■□□□□ 0.93
MSH4O15457 ZNF444P1-201ENST00000559497 298 ntBASIC20.83■□□□□ 0.93
MSH4O15457 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
MSH4O15457 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
MSH4O15457 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC20.83■□□□□ 0.93
MSH4O15457 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
MSH4O15457 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
MSH4O15457 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC20.83■□□□□ 0.92
MSH4O15457 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
MSH4O15457 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
MSH4O15457 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
MSH4O15457 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
MSH4O15457 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
MSH4O15457 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
MSH4O15457 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
MSH4O15457 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC20.82■□□□□ 0.92
MSH4O15457 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
MSH4O15457 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
MSH4O15457 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
MSH4O15457 UROS-202ENST00000368778 1556 ntTSL 2 BASIC20.82■□□□□ 0.92
MSH4O15457 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
MSH4O15457 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MSH4O15457 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC20.82■□□□□ 0.92
MSH4O15457 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
MSH4O15457 PVRIG2P-201ENST00000435460 978 ntBASIC20.82■□□□□ 0.92
MSH4O15457 CD320-202ENST00000537716 1119 ntTSL 2 BASIC20.82■□□□□ 0.92
MSH4O15457 AL136038.4-201ENST00000603606 1261 ntBASIC20.82■□□□□ 0.92
MSH4O15457 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC20.82■□□□□ 0.92
MSH4O15457 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
MSH4O15457 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
MSH4O15457 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MSH4O15457 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MSH4O15457 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC20.82■□□□□ 0.92
MSH4O15457 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC20.82■□□□□ 0.92
MSH4O15457 PBK-203ENST00000522944 1499 ntTSL 2 BASIC20.81■□□□□ 0.92
MSH4O15457 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
MSH4O15457 AC126763.1-201ENST00000552015 2118 ntBASIC20.81■□□□□ 0.92
MSH4O15457 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
MSH4O15457 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
MSH4O15457 STX6-204ENST00000542060 4809 ntTSL 2 BASIC20.81■□□□□ 0.92
MSH4O15457 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
MSH4O15457 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
MSH4O15457 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
MSH4O15457 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC20.81■□□□□ 0.92
MSH4O15457 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
MSH4O15457 BET1L-202ENST00000332865 533 ntTSL 5 BASIC20.81■□□□□ 0.92
MSH4O15457 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
MSH4O15457 DAP-202ENST00000432074 1048 ntTSL 2 BASIC20.81■□□□□ 0.92
MSH4O15457 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
MSH4O15457 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC20.81■□□□□ 0.92
MSH4O15457 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC20.81■□□□□ 0.92
MSH4O15457 REEP1-209ENST00000541910 969 ntTSL 2 BASIC20.81■□□□□ 0.92
MSH4O15457 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
MSH4O15457 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC20.81■□□□□ 0.92
MSH4O15457 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
MSH4O15457 AC004408.2-201ENST00000623613 2777 ntBASIC20.81■□□□□ 0.92
MSH4O15457 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
MSH4O15457 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC20.81■□□□□ 0.92
MSH4O15457 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 62.3 ms