Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.23■□□□□ 0.51
PCDHB3Q9Y5E6 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
PCDHB3Q9Y5E6 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PCDHB3Q9Y5E6 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PCDHB3Q9Y5E6 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.23■□□□□ 0.51
PCDHB3Q9Y5E6 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PCDHB3Q9Y5E6 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PCDHB3Q9Y5E6 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PCDHB3Q9Y5E6 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
PCDHB3Q9Y5E6 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.22■□□□□ 0.51
PCDHB3Q9Y5E6 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PCDHB3Q9Y5E6 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PCDHB3Q9Y5E6 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PCDHB3Q9Y5E6 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PCDHB3Q9Y5E6 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PCDHB3Q9Y5E6 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
PCDHB3Q9Y5E6 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
PCDHB3Q9Y5E6 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PCDHB3Q9Y5E6 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC18.22■□□□□ 0.51
PCDHB3Q9Y5E6 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC18.22■□□□□ 0.51
PCDHB3Q9Y5E6 AC120057.1-201ENST00000483947 663 ntBASIC18.22■□□□□ 0.51
PCDHB3Q9Y5E6 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC18.22■□□□□ 0.51
PCDHB3Q9Y5E6 AL353719.1-201ENST00000566847 864 ntBASIC18.22■□□□□ 0.51
PCDHB3Q9Y5E6 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC18.22■□□□□ 0.51
PCDHB3Q9Y5E6 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC18.22■□□□□ 0.51
PCDHB3Q9Y5E6 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
PCDHB3Q9Y5E6 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC18.22■□□□□ 0.51
PCDHB3Q9Y5E6 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
PCDHB3Q9Y5E6 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC18.22■□□□□ 0.51
PCDHB3Q9Y5E6 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.22■□□□□ 0.51
PCDHB3Q9Y5E6 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PCDHB3Q9Y5E6 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PCDHB3Q9Y5E6 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
PCDHB3Q9Y5E6 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PCDHB3Q9Y5E6 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PCDHB3Q9Y5E6 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC18.22■□□□□ 0.51
PCDHB3Q9Y5E6 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHB3Q9Y5E6 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHB3Q9Y5E6 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHB3Q9Y5E6 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC18.21■□□□□ 0.51
PCDHB3Q9Y5E6 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.21■□□□□ 0.51
PCDHB3Q9Y5E6 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
PCDHB3Q9Y5E6 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHB3Q9Y5E6 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHB3Q9Y5E6 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHB3Q9Y5E6 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC18.21■□□□□ 0.51
PCDHB3Q9Y5E6 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHB3Q9Y5E6 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
PCDHB3Q9Y5E6 GXYLT1P6-201ENST00000456472 1187 ntBASIC18.21■□□□□ 0.51
PCDHB3Q9Y5E6 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.21■□□□□ 0.51
PCDHB3Q9Y5E6 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18.21■□□□□ 0.51
PCDHB3Q9Y5E6 AL512604.3-201ENST00000569583 964 ntBASIC18.21■□□□□ 0.51
PCDHB3Q9Y5E6 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHB3Q9Y5E6 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.21■□□□□ 0.51
PCDHB3Q9Y5E6 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC18.21■□□□□ 0.51
PCDHB3Q9Y5E6 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHB3Q9Y5E6 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHB3Q9Y5E6 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.21■□□□□ 0.51
PCDHB3Q9Y5E6 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHB3Q9Y5E6 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
PCDHB3Q9Y5E6 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.21■□□□□ 0.51
PCDHB3Q9Y5E6 BICD1-207ENST00000551848 1962 ntBASIC18.21■□□□□ 0.5
PCDHB3Q9Y5E6 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHB3Q9Y5E6 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHB3Q9Y5E6 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.2■□□□□ 0.5
PCDHB3Q9Y5E6 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHB3Q9Y5E6 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
PCDHB3Q9Y5E6 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHB3Q9Y5E6 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC18.2■□□□□ 0.5
PCDHB3Q9Y5E6 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHB3Q9Y5E6 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHB3Q9Y5E6 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.2■□□□□ 0.5
PCDHB3Q9Y5E6 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHB3Q9Y5E6 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.2■□□□□ 0.5
PCDHB3Q9Y5E6 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHB3Q9Y5E6 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHB3Q9Y5E6 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHB3Q9Y5E6 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC18.2■□□□□ 0.5
PCDHB3Q9Y5E6 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHB3Q9Y5E6 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHB3Q9Y5E6 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC18.2■□□□□ 0.5
PCDHB3Q9Y5E6 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHB3Q9Y5E6 AC022616.7-201ENST00000525383 220 ntBASIC18.2■□□□□ 0.5
PCDHB3Q9Y5E6 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC18.2■□□□□ 0.5
PCDHB3Q9Y5E6 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.2■□□□□ 0.5
PCDHB3Q9Y5E6 AC091076.1-201ENST00000610741 619 ntBASIC18.2■□□□□ 0.5
PCDHB3Q9Y5E6 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHB3Q9Y5E6 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHB3Q9Y5E6 AL512353.2-201ENST00000448759 1962 ntBASIC18.2■□□□□ 0.5
PCDHB3Q9Y5E6 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC18.2■□□□□ 0.5
PCDHB3Q9Y5E6 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.2■□□□□ 0.5
PCDHB3Q9Y5E6 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.2■□□□□ 0.5
PCDHB3Q9Y5E6 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHB3Q9Y5E6 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.19■□□□□ 0.5
PCDHB3Q9Y5E6 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.19■□□□□ 0.5
PCDHB3Q9Y5E6 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCDHB3Q9Y5E6 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCDHB3Q9Y5E6 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCDHB3Q9Y5E6 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCDHB3Q9Y5E6 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms