Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC19.31■□□□□ 0.68
AP4E1Q9UPM8 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
AP4E1Q9UPM8 LINC01568-207ENST00000641790 1380 ntBASIC19.31■□□□□ 0.68
AP4E1Q9UPM8 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.68
AP4E1Q9UPM8 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC19.3■□□□□ 0.68
AP4E1Q9UPM8 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
AP4E1Q9UPM8 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
AP4E1Q9UPM8 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
AP4E1Q9UPM8 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
AP4E1Q9UPM8 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
AP4E1Q9UPM8 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
AP4E1Q9UPM8 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
AP4E1Q9UPM8 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
AP4E1Q9UPM8 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
AP4E1Q9UPM8 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
AP4E1Q9UPM8 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
AP4E1Q9UPM8 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
AP4E1Q9UPM8 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC19.3■□□□□ 0.68
AP4E1Q9UPM8 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
AP4E1Q9UPM8 ILF2-202ENST00000368681 726 ntTSL 2 BASIC19.3■□□□□ 0.68
AP4E1Q9UPM8 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC19.3■□□□□ 0.68
AP4E1Q9UPM8 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC19.3■□□□□ 0.68
AP4E1Q9UPM8 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC19.3■□□□□ 0.68
AP4E1Q9UPM8 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
AP4E1Q9UPM8 WWOX-216ENST00000569818 525 ntBASIC19.3■□□□□ 0.68
AP4E1Q9UPM8 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
AP4E1Q9UPM8 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
AP4E1Q9UPM8 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
AP4E1Q9UPM8 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC19.3■□□□□ 0.68
AP4E1Q9UPM8 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
AP4E1Q9UPM8 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC19.3■□□□□ 0.68
AP4E1Q9UPM8 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC19.3■□□□□ 0.68
AP4E1Q9UPM8 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
AP4E1Q9UPM8 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
AP4E1Q9UPM8 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
AP4E1Q9UPM8 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC19.3■□□□□ 0.68
AP4E1Q9UPM8 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC19.29■□□□□ 0.68
AP4E1Q9UPM8 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC19.29■□□□□ 0.68
AP4E1Q9UPM8 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
AP4E1Q9UPM8 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC19.29■□□□□ 0.68
AP4E1Q9UPM8 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
AP4E1Q9UPM8 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC19.29■□□□□ 0.68
AP4E1Q9UPM8 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
AP4E1Q9UPM8 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
AP4E1Q9UPM8 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
AP4E1Q9UPM8 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
AP4E1Q9UPM8 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
AP4E1Q9UPM8 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
AP4E1Q9UPM8 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
AP4E1Q9UPM8 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC19.29■□□□□ 0.68
AP4E1Q9UPM8 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC19.29■□□□□ 0.68
AP4E1Q9UPM8 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
AP4E1Q9UPM8 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC19.29■□□□□ 0.68
AP4E1Q9UPM8 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
AP4E1Q9UPM8 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
AP4E1Q9UPM8 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
AP4E1Q9UPM8 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
AP4E1Q9UPM8 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC19.29■□□□□ 0.68
AP4E1Q9UPM8 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
AP4E1Q9UPM8 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
AP4E1Q9UPM8 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
AP4E1Q9UPM8 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
AP4E1Q9UPM8 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
AP4E1Q9UPM8 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
AP4E1Q9UPM8 MYLKP1-201ENST00000509077 1580 ntBASIC19.28■□□□□ 0.68
AP4E1Q9UPM8 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC19.28■□□□□ 0.68
AP4E1Q9UPM8 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
AP4E1Q9UPM8 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
AP4E1Q9UPM8 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
AP4E1Q9UPM8 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC19.28■□□□□ 0.68
AP4E1Q9UPM8 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
AP4E1Q9UPM8 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
AP4E1Q9UPM8 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
AP4E1Q9UPM8 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
AP4E1Q9UPM8 CFL2-205ENST00000555765 632 ntTSL 2 BASIC19.28■□□□□ 0.68
AP4E1Q9UPM8 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
AP4E1Q9UPM8 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC19.28■□□□□ 0.68
AP4E1Q9UPM8 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC19.28■□□□□ 0.68
AP4E1Q9UPM8 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC19.28■□□□□ 0.68
AP4E1Q9UPM8 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
AP4E1Q9UPM8 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC19.28■□□□□ 0.68
AP4E1Q9UPM8 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
AP4E1Q9UPM8 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
AP4E1Q9UPM8 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
AP4E1Q9UPM8 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC19.28■□□□□ 0.68
AP4E1Q9UPM8 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
AP4E1Q9UPM8 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
AP4E1Q9UPM8 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC19.28■□□□□ 0.68
AP4E1Q9UPM8 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
AP4E1Q9UPM8 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
AP4E1Q9UPM8 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC19.28■□□□□ 0.68
AP4E1Q9UPM8 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
AP4E1Q9UPM8 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
AP4E1Q9UPM8 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
AP4E1Q9UPM8 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
AP4E1Q9UPM8 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
AP4E1Q9UPM8 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC19.27■□□□□ 0.68
AP4E1Q9UPM8 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC19.27■□□□□ 0.68
AP4E1Q9UPM8 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
AP4E1Q9UPM8 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 72.1 ms