Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
COL17A1Q9UMD9 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
COL17A1Q9UMD9 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC28.11■■■□□ 2.09
COL17A1Q9UMD9 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC28.11■■■□□ 2.09
COL17A1Q9UMD9 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
COL17A1Q9UMD9 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
COL17A1Q9UMD9 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
COL17A1Q9UMD9 PNMT-202ENST00000394246 821 ntTSL 2 BASIC28.11■■■□□ 2.09
COL17A1Q9UMD9 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC28.11■■■□□ 2.09
COL17A1Q9UMD9 BCRP1-201ENST00000444246 691 ntBASIC28.11■■■□□ 2.09
COL17A1Q9UMD9 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC28.11■■■□□ 2.09
COL17A1Q9UMD9 AC106028.4-201ENST00000614509 607 ntBASIC28.11■■■□□ 2.09
COL17A1Q9UMD9 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC28.11■■■□□ 2.09
COL17A1Q9UMD9 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC28.11■■■□□ 2.09
COL17A1Q9UMD9 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC28.11■■■□□ 2.09
COL17A1Q9UMD9 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC28.1■■■□□ 2.09
COL17A1Q9UMD9 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC28.1■■■□□ 2.09
COL17A1Q9UMD9 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
COL17A1Q9UMD9 ENSA-205ENST00000361532 792 ntTSL 2 BASIC28.1■■■□□ 2.09
COL17A1Q9UMD9 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
COL17A1Q9UMD9 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
COL17A1Q9UMD9 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC28.1■■■□□ 2.09
COL17A1Q9UMD9 CYGB-205ENST00000590175 830 ntTSL 3 BASIC28.1■■■□□ 2.09
COL17A1Q9UMD9 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC28.1■■■□□ 2.09
COL17A1Q9UMD9 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC28.1■■■□□ 2.09
COL17A1Q9UMD9 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
COL17A1Q9UMD9 AL162377.1-201ENST00000618844 1793 ntBASIC28.1■■■□□ 2.09
COL17A1Q9UMD9 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC28.09■■■□□ 2.09
COL17A1Q9UMD9 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
COL17A1Q9UMD9 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC28.09■■■□□ 2.09
COL17A1Q9UMD9 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC28.09■■■□□ 2.09
COL17A1Q9UMD9 KIRREL3-AS3-201ENST00000404882 831 ntBASIC28.09■■■□□ 2.09
COL17A1Q9UMD9 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
COL17A1Q9UMD9 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC28.09■■■□□ 2.09
COL17A1Q9UMD9 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC28.09■■■□□ 2.09
COL17A1Q9UMD9 REEP1-209ENST00000541910 969 ntTSL 2 BASIC28.09■■■□□ 2.09
COL17A1Q9UMD9 MIR4469-201ENST00000583919 79 ntBASIC28.09■■■□□ 2.09
COL17A1Q9UMD9 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC28.09■■■□□ 2.09
COL17A1Q9UMD9 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
COL17A1Q9UMD9 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC28.09■■■□□ 2.09
COL17A1Q9UMD9 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC28.09■■■□□ 2.09
COL17A1Q9UMD9 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC28.09■■■□□ 2.09
COL17A1Q9UMD9 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC28.09■■■□□ 2.09
COL17A1Q9UMD9 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
COL17A1Q9UMD9 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
COL17A1Q9UMD9 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC28.08■■■□□ 2.09
COL17A1Q9UMD9 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC28.08■■■□□ 2.09
COL17A1Q9UMD9 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC28.08■■■□□ 2.09
COL17A1Q9UMD9 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC28.08■■■□□ 2.09
COL17A1Q9UMD9 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC28.08■■■□□ 2.09
COL17A1Q9UMD9 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC28.08■■■□□ 2.09
COL17A1Q9UMD9 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
COL17A1Q9UMD9 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC28.08■■■□□ 2.09
COL17A1Q9UMD9 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC28.08■■■□□ 2.09
COL17A1Q9UMD9 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC28.08■■■□□ 2.09
COL17A1Q9UMD9 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC28.08■■■□□ 2.09
COL17A1Q9UMD9 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC28.08■■■□□ 2.09
COL17A1Q9UMD9 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC28.08■■■□□ 2.09
COL17A1Q9UMD9 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
COL17A1Q9UMD9 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
COL17A1Q9UMD9 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC28.08■■■□□ 2.09
COL17A1Q9UMD9 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
COL17A1Q9UMD9 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC28.08■■■□□ 2.09
COL17A1Q9UMD9 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC28.08■■■□□ 2.09
COL17A1Q9UMD9 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC28.08■■■□□ 2.09
COL17A1Q9UMD9 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC28.08■■■□□ 2.09
COL17A1Q9UMD9 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC28.08■■■□□ 2.09
COL17A1Q9UMD9 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC28.08■■■□□ 2.09
COL17A1Q9UMD9 COX5A-206ENST00000568783 571 ntTSL 3 BASIC28.08■■■□□ 2.09
COL17A1Q9UMD9 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC28.08■■■□□ 2.09
COL17A1Q9UMD9 AC027612.4-201ENST00000605371 583 ntBASIC28.08■■■□□ 2.09
COL17A1Q9UMD9 AC112777.1-201ENST00000540175 1423 ntBASIC28.08■■■□□ 2.08
COL17A1Q9UMD9 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
COL17A1Q9UMD9 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC28.07■■■□□ 2.08
COL17A1Q9UMD9 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC28.07■■■□□ 2.08
COL17A1Q9UMD9 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
COL17A1Q9UMD9 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC28.07■■■□□ 2.08
COL17A1Q9UMD9 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC28.07■■■□□ 2.08
COL17A1Q9UMD9 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC28.07■■■□□ 2.08
COL17A1Q9UMD9 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
COL17A1Q9UMD9 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC28.07■■■□□ 2.08
COL17A1Q9UMD9 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC28.07■■■□□ 2.08
COL17A1Q9UMD9 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC28.07■■■□□ 2.08
COL17A1Q9UMD9 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC28.07■■■□□ 2.08
COL17A1Q9UMD9 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC28.07■■■□□ 2.08
COL17A1Q9UMD9 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC28.07■■■□□ 2.08
COL17A1Q9UMD9 AC073314.1-201ENST00000568729 2216 ntBASIC28.07■■■□□ 2.08
COL17A1Q9UMD9 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
COL17A1Q9UMD9 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
COL17A1Q9UMD9 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC28.06■■■□□ 2.08
COL17A1Q9UMD9 PUDP-206ENST00000540122 825 ntTSL 2 BASIC28.06■■■□□ 2.08
COL17A1Q9UMD9 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC28.06■■■□□ 2.08
COL17A1Q9UMD9 AP002472.1-201ENST00000577490 586 ntBASIC28.06■■■□□ 2.08
COL17A1Q9UMD9 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
COL17A1Q9UMD9 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC28.06■■■□□ 2.08
COL17A1Q9UMD9 AL512353.2-201ENST00000448759 1962 ntBASIC28.06■■■□□ 2.08
COL17A1Q9UMD9 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC28.06■■■□□ 2.08
COL17A1Q9UMD9 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
COL17A1Q9UMD9 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC28.06■■■□□ 2.08
COL17A1Q9UMD9 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC28.05■■■□□ 2.08
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms