Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SMARCAL1Q9NZC9 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
SMARCAL1Q9NZC9 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC19.61■□□□□ 0.73
SMARCAL1Q9NZC9 TBCB-214ENST00000629269 413 ntTSL 5 BASIC19.61■□□□□ 0.73
SMARCAL1Q9NZC9 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
SMARCAL1Q9NZC9 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC19.61■□□□□ 0.73
SMARCAL1Q9NZC9 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
SMARCAL1Q9NZC9 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
SMARCAL1Q9NZC9 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SMARCAL1Q9NZC9 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SMARCAL1Q9NZC9 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC19.61■□□□□ 0.73
SMARCAL1Q9NZC9 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SMARCAL1Q9NZC9 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SMARCAL1Q9NZC9 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SMARCAL1Q9NZC9 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SMARCAL1Q9NZC9 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SMARCAL1Q9NZC9 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
SMARCAL1Q9NZC9 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SMARCAL1Q9NZC9 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SMARCAL1Q9NZC9 REXO1L9P-201ENST00000604264 2108 ntBASIC19.6■□□□□ 0.73
SMARCAL1Q9NZC9 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC19.6■□□□□ 0.73
SMARCAL1Q9NZC9 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SMARCAL1Q9NZC9 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC19.6■□□□□ 0.73
SMARCAL1Q9NZC9 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SMARCAL1Q9NZC9 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SMARCAL1Q9NZC9 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SMARCAL1Q9NZC9 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC19.6■□□□□ 0.73
SMARCAL1Q9NZC9 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC19.6■□□□□ 0.73
SMARCAL1Q9NZC9 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC19.6■□□□□ 0.73
SMARCAL1Q9NZC9 DENND3-207ENST00000518347 850 ntTSL 2 BASIC19.6■□□□□ 0.73
SMARCAL1Q9NZC9 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC19.6■□□□□ 0.73
SMARCAL1Q9NZC9 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SMARCAL1Q9NZC9 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC19.6■□□□□ 0.73
SMARCAL1Q9NZC9 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC19.6■□□□□ 0.73
SMARCAL1Q9NZC9 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC19.6■□□□□ 0.73
SMARCAL1Q9NZC9 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SMARCAL1Q9NZC9 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SMARCAL1Q9NZC9 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SMARCAL1Q9NZC9 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SMARCAL1Q9NZC9 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SMARCAL1Q9NZC9 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SMARCAL1Q9NZC9 AL357033.4-201ENST00000617703 1807 ntBASIC19.6■□□□□ 0.73
SMARCAL1Q9NZC9 NBPF21P-201ENST00000425093 1451 ntBASIC19.6■□□□□ 0.73
SMARCAL1Q9NZC9 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC19.59■□□□□ 0.73
SMARCAL1Q9NZC9 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC19.59■□□□□ 0.73
SMARCAL1Q9NZC9 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMARCAL1Q9NZC9 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC19.59■□□□□ 0.73
SMARCAL1Q9NZC9 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
SMARCAL1Q9NZC9 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMARCAL1Q9NZC9 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
SMARCAL1Q9NZC9 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMARCAL1Q9NZC9 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMARCAL1Q9NZC9 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC19.59■□□□□ 0.73
SMARCAL1Q9NZC9 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMARCAL1Q9NZC9 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SMARCAL1Q9NZC9 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
SMARCAL1Q9NZC9 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC19.59■□□□□ 0.73
SMARCAL1Q9NZC9 Z85996.1-201ENST00000494644 937 ntBASIC19.59■□□□□ 0.73
SMARCAL1Q9NZC9 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC19.59■□□□□ 0.73
SMARCAL1Q9NZC9 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SMARCAL1Q9NZC9 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
SMARCAL1Q9NZC9 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SMARCAL1Q9NZC9 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SMARCAL1Q9NZC9 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMARCAL1Q9NZC9 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC19.59■□□□□ 0.73
SMARCAL1Q9NZC9 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC19.59■□□□□ 0.73
SMARCAL1Q9NZC9 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SMARCAL1Q9NZC9 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMARCAL1Q9NZC9 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SMARCAL1Q9NZC9 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMARCAL1Q9NZC9 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SMARCAL1Q9NZC9 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SMARCAL1Q9NZC9 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SMARCAL1Q9NZC9 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
SMARCAL1Q9NZC9 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SMARCAL1Q9NZC9 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC19.58■□□□□ 0.73
SMARCAL1Q9NZC9 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SMARCAL1Q9NZC9 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SMARCAL1Q9NZC9 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC19.58■□□□□ 0.72
SMARCAL1Q9NZC9 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC19.58■□□□□ 0.72
SMARCAL1Q9NZC9 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC19.58■□□□□ 0.72
SMARCAL1Q9NZC9 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SMARCAL1Q9NZC9 POU5F1P3-201ENST00000428824 1078 ntBASIC19.58■□□□□ 0.72
SMARCAL1Q9NZC9 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC19.58■□□□□ 0.72
SMARCAL1Q9NZC9 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC19.58■□□□□ 0.72
SMARCAL1Q9NZC9 CD99P1-205ENST00000527459 561 ntBASIC19.58■□□□□ 0.72
SMARCAL1Q9NZC9 AP003097.1-201ENST00000530657 1135 ntBASIC19.58■□□□□ 0.72
SMARCAL1Q9NZC9 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC19.58■□□□□ 0.72
SMARCAL1Q9NZC9 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SMARCAL1Q9NZC9 KRT8P32-201ENST00000512863 1461 ntBASIC19.58■□□□□ 0.72
SMARCAL1Q9NZC9 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SMARCAL1Q9NZC9 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
SMARCAL1Q9NZC9 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SMARCAL1Q9NZC9 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SMARCAL1Q9NZC9 KRT8P11-201ENST00000409686 1436 ntBASIC19.58■□□□□ 0.72
SMARCAL1Q9NZC9 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC19.58■□□□□ 0.72
SMARCAL1Q9NZC9 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SMARCAL1Q9NZC9 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SMARCAL1Q9NZC9 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
SMARCAL1Q9NZC9 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms