Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
DDX4Q9NQI0 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC21.94■■□□□ 1.1
DDX4Q9NQI0 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
DDX4Q9NQI0 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC21.94■■□□□ 1.1
DDX4Q9NQI0 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
DDX4Q9NQI0 AL592071.1-201ENST00000611956 408 ntBASIC21.94■■□□□ 1.1
DDX4Q9NQI0 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
DDX4Q9NQI0 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC21.94■■□□□ 1.1
DDX4Q9NQI0 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
DDX4Q9NQI0 AC233702.3-201ENST00000578656 1387 ntBASIC21.94■■□□□ 1.1
DDX4Q9NQI0 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
DDX4Q9NQI0 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC21.94■■□□□ 1.1
DDX4Q9NQI0 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
DDX4Q9NQI0 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
DDX4Q9NQI0 AL163051.1-201ENST00000569214 1512 ntBASIC21.94■■□□□ 1.1
DDX4Q9NQI0 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
DDX4Q9NQI0 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
DDX4Q9NQI0 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
DDX4Q9NQI0 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
DDX4Q9NQI0 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
DDX4Q9NQI0 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
DDX4Q9NQI0 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
DDX4Q9NQI0 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
DDX4Q9NQI0 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
DDX4Q9NQI0 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
DDX4Q9NQI0 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
DDX4Q9NQI0 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC21.93■■□□□ 1.1
DDX4Q9NQI0 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC21.93■■□□□ 1.1
DDX4Q9NQI0 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC21.93■■□□□ 1.1
DDX4Q9NQI0 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC21.93■■□□□ 1.1
DDX4Q9NQI0 EMBP1-201ENST00000458200 901 ntBASIC21.93■■□□□ 1.1
DDX4Q9NQI0 AC091607.1-201ENST00000490318 1060 ntBASIC21.93■■□□□ 1.1
DDX4Q9NQI0 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
DDX4Q9NQI0 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC21.93■■□□□ 1.1
DDX4Q9NQI0 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
DDX4Q9NQI0 AC083906.6-201ENST00000641366 219 ntBASIC21.93■■□□□ 1.1
DDX4Q9NQI0 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
DDX4Q9NQI0 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
DDX4Q9NQI0 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
DDX4Q9NQI0 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
DDX4Q9NQI0 LINC00167-201ENST00000530583 1419 ntBASIC21.92■■□□□ 1.1
DDX4Q9NQI0 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC21.92■■□□□ 1.1
DDX4Q9NQI0 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC21.92■■□□□ 1.1
DDX4Q9NQI0 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
DDX4Q9NQI0 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC21.92■■□□□ 1.1
DDX4Q9NQI0 FDX1P1-201ENST00000449115 551 ntBASIC21.92■■□□□ 1.1
DDX4Q9NQI0 AP005901.3-202ENST00000581653 237 ntBASIC21.92■■□□□ 1.1
DDX4Q9NQI0 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC21.92■■□□□ 1.1
DDX4Q9NQI0 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC21.92■■□□□ 1.1
DDX4Q9NQI0 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
DDX4Q9NQI0 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC21.92■■□□□ 1.1
DDX4Q9NQI0 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
DDX4Q9NQI0 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
DDX4Q9NQI0 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
DDX4Q9NQI0 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC21.91■■□□□ 1.1
DDX4Q9NQI0 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
DDX4Q9NQI0 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
DDX4Q9NQI0 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
DDX4Q9NQI0 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
DDX4Q9NQI0 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
DDX4Q9NQI0 SNAI3-AS1-205ENST00000568633 2096 ntBASIC21.91■■□□□ 1.1
DDX4Q9NQI0 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
DDX4Q9NQI0 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC21.91■■□□□ 1.1
DDX4Q9NQI0 AC004870.1-201ENST00000315132 882 ntBASIC21.91■■□□□ 1.1
DDX4Q9NQI0 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
DDX4Q9NQI0 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC21.91■■□□□ 1.1
DDX4Q9NQI0 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC21.91■■□□□ 1.1
DDX4Q9NQI0 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC21.91■■□□□ 1.1
DDX4Q9NQI0 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC21.91■■□□□ 1.1
DDX4Q9NQI0 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
DDX4Q9NQI0 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC21.91■■□□□ 1.1
DDX4Q9NQI0 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
DDX4Q9NQI0 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
DDX4Q9NQI0 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC21.91■■□□□ 1.1
DDX4Q9NQI0 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
DDX4Q9NQI0 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
DDX4Q9NQI0 AC116562.4-201ENST00000641316 2276 ntBASIC21.91■■□□□ 1.1
DDX4Q9NQI0 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
DDX4Q9NQI0 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC21.91■■□□□ 1.1
DDX4Q9NQI0 PTGES2-AS1-201ENST00000443493 2100 ntBASIC21.91■■□□□ 1.1
DDX4Q9NQI0 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
DDX4Q9NQI0 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
DDX4Q9NQI0 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
DDX4Q9NQI0 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC21.9■■□□□ 1.1
DDX4Q9NQI0 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
DDX4Q9NQI0 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
DDX4Q9NQI0 AL353692.3-201ENST00000407031 1396 ntBASIC21.9■■□□□ 1.1
DDX4Q9NQI0 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
DDX4Q9NQI0 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
DDX4Q9NQI0 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC21.9■■□□□ 1.1
DDX4Q9NQI0 IGHV3-47-201ENST00000425060 335 ntBASIC21.9■■□□□ 1.1
DDX4Q9NQI0 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC21.9■■□□□ 1.1
DDX4Q9NQI0 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC21.9■■□□□ 1.1
DDX4Q9NQI0 KRT18P31-201ENST00000506277 1292 ntBASIC21.9■■□□□ 1.1
DDX4Q9NQI0 PPOX-214ENST00000535223 664 ntTSL 3 BASIC21.9■■□□□ 1.1
DDX4Q9NQI0 AC074051.2-201ENST00000565115 352 ntBASIC21.9■■□□□ 1.1
DDX4Q9NQI0 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
DDX4Q9NQI0 AC124864.1-201ENST00000623408 392 ntBASIC21.9■■□□□ 1.1
DDX4Q9NQI0 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
DDX4Q9NQI0 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC21.9■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms