Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC16.33■□□□□ 0.2
LIME1Q9H400 AL049812.1-201ENST00000432563 2267 ntBASIC16.33■□□□□ 0.2
LIME1Q9H400 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LIME1Q9H400 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIME1Q9H400 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIME1Q9H400 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIME1Q9H400 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC16.32■□□□□ 0.2
LIME1Q9H400 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIME1Q9H400 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIME1Q9H400 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LIME1Q9H400 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC16.32■□□□□ 0.2
LIME1Q9H400 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC16.32■□□□□ 0.2
LIME1Q9H400 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC16.32■□□□□ 0.2
LIME1Q9H400 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIME1Q9H400 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIME1Q9H400 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LIME1Q9H400 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIME1Q9H400 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIME1Q9H400 KRT8P10-201ENST00000450021 1447 ntBASIC16.32■□□□□ 0.2
LIME1Q9H400 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
LIME1Q9H400 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
LIME1Q9H400 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC16.32■□□□□ 0.2
LIME1Q9H400 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
LIME1Q9H400 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LIME1Q9H400 CR769767.2-201ENST00000622735 460 ntBASIC16.32■□□□□ 0.2
LIME1Q9H400 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIME1Q9H400 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC16.32■□□□□ 0.2
LIME1Q9H400 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIME1Q9H400 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIME1Q9H400 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIME1Q9H400 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
LIME1Q9H400 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIME1Q9H400 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC16.31■□□□□ 0.2
LIME1Q9H400 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIME1Q9H400 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC16.31■□□□□ 0.2
LIME1Q9H400 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LIME1Q9H400 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LIME1Q9H400 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIME1Q9H400 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIME1Q9H400 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIME1Q9H400 AC004870.1-201ENST00000315132 882 ntBASIC16.31■□□□□ 0.2
LIME1Q9H400 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC16.31■□□□□ 0.2
LIME1Q9H400 PPIH-202ENST00000372549 327 ntTSL 3 BASIC16.31■□□□□ 0.2
LIME1Q9H400 GAD2-202ENST00000376248 680 ntTSL 5 BASIC16.31■□□□□ 0.2
LIME1Q9H400 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC16.31■□□□□ 0.2
LIME1Q9H400 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIME1Q9H400 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC16.31■□□□□ 0.2
LIME1Q9H400 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC16.31■□□□□ 0.2
LIME1Q9H400 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIME1Q9H400 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC16.31■□□□□ 0.2
LIME1Q9H400 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIME1Q9H400 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC16.31■□□□□ 0.2
LIME1Q9H400 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
LIME1Q9H400 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIME1Q9H400 AL161938.1-201ENST00000569833 2180 ntBASIC16.31■□□□□ 0.2
LIME1Q9H400 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIME1Q9H400 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
LIME1Q9H400 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIME1Q9H400 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
LIME1Q9H400 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
LIME1Q9H400 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIME1Q9H400 AC007613.1-201ENST00000572811 2597 ntBASIC16.31■□□□□ 0.2
LIME1Q9H400 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIME1Q9H400 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIME1Q9H400 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC16.3■□□□□ 0.2
LIME1Q9H400 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIME1Q9H400 TBC1D3P2-202ENST00000577902 1649 ntBASIC16.3■□□□□ 0.2
LIME1Q9H400 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC16.3■□□□□ 0.2
LIME1Q9H400 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIME1Q9H400 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIME1Q9H400 AC016734.2-201ENST00000624325 1377 ntBASIC16.3■□□□□ 0.2
LIME1Q9H400 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIME1Q9H400 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC16.3■□□□□ 0.2
LIME1Q9H400 BUB3-202ENST00000368859 667 ntTSL 3 BASIC16.3■□□□□ 0.2
LIME1Q9H400 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC16.3■□□□□ 0.2
LIME1Q9H400 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
LIME1Q9H400 TSSC2-201ENST00000450217 709 ntBASIC16.3■□□□□ 0.2
LIME1Q9H400 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIME1Q9H400 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC16.3■□□□□ 0.2
LIME1Q9H400 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC16.3■□□□□ 0.2
LIME1Q9H400 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
LIME1Q9H400 AC111152.3-201ENST00000569699 673 ntBASIC16.3■□□□□ 0.2
LIME1Q9H400 MIR3180-1-201ENST00000580374 94 ntBASIC16.3■□□□□ 0.2
LIME1Q9H400 MIR3180-3-201ENST00000584616 94 ntBASIC16.3■□□□□ 0.2
LIME1Q9H400 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIME1Q9H400 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIME1Q9H400 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LIME1Q9H400 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC16.3■□□□□ 0.2
LIME1Q9H400 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
LIME1Q9H400 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC16.3■□□□□ 0.2
LIME1Q9H400 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LIME1Q9H400 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIME1Q9H400 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIME1Q9H400 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LIME1Q9H400 ADK-206ENST00000541550 2222 ntTSL 2 BASIC16.3■□□□□ 0.2
LIME1Q9H400 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC16.3■□□□□ 0.2
LIME1Q9H400 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIME1Q9H400 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LIME1Q9H400 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIME1Q9H400 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms