Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 RPS19BP1-206ENST00000491966 647 ntTSL 222.49■■□□□ 1.193e-8■■■□□ 17
UPF1Q92900 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.583e-8■■■□□ 17
UPF1Q92900 MCF2L-221ENST00000469415 3027 ntTSL 1 (best)18.28■□□□□ 0.523e-8■■■□□ 17
UPF1Q92900 EIF2B5-204ENST00000465218 1310 ntTSL 518.03■□□□□ 0.483e-8■■■□□ 17
UPF1Q92900 EIF2B5-212ENST00000491144 3038 ntTSL 217.58■□□□□ 0.43e-8■■■□□ 17
UPF1Q92900 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.45■□□□□ 0.383e-8■■■□□ 17
UPF1Q92900 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.13■□□□□ 0.333e-8■■■□□ 17
UPF1Q92900 AS3MT-202ENST00000615257 1723 ntTSL 5 BASIC16.82■□□□□ 0.283e-8■■■□□ 17
UPF1Q92900 MCF2L-205ENST00000397017 3903 ntTSL 516.54■□□□□ 0.243e-8■■■□□ 17
UPF1Q92900 MCF2L-229ENST00000488765 3205 ntTSL 215.62■□□□□ 0.093e-8■■■□□ 17
UPF1Q92900 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.043e-8■■■□□ 17
UPF1Q92900 EIF2B5-209ENST00000481054 3460 ntTSL 1 (best)13.91□□□□□ -0.183e-8■■■□□ 17
UPF1Q92900 MCF2L-204ENST00000375608 3648 ntTSL 5 BASIC13.19□□□□□ -0.33e-8■■■□□ 17
UPF1Q92900 AS3MT-201ENST00000369880 2404 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.323e-8■■■□□ 17
UPF1Q92900 RPS19BP1-205ENST00000488602 2801 ntTSL 212.92□□□□□ -0.343e-8■■■□□ 17
UPF1Q92900 OGFOD1-207ENST00000566157 4647 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.443e-8■■■□□ 17
UPF1Q92900 TM9SF2-201ENST00000376387 3430 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.63e-8■■■□□ 17
UPF1Q92900 RNASEK-C17orf49-204ENST00000607564 892 ntTSL 531.67■■■□□ 2.669e-9■■■□□ 16.9
UPF1Q92900 RNASEK-C17orf49-202ENST00000547863 1662 ntTSL 229.23■■■□□ 2.279e-9■■■□□ 16.9
UPF1Q92900 RNASEK-205ENST00000552176 1485 ntTSL 228.85■■■□□ 2.219e-9■■■□□ 16.9
UPF1Q92900 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC26.31■■□□□ 1.89e-9■■■□□ 16.9
UPF1Q92900 RNASEK-C17orf49-203ENST00000549775 1856 ntTSL 525.77■■□□□ 1.729e-9■■■□□ 16.9
UPF1Q92900 RNASEK-201ENST00000546395 952 ntTSL 1 (best)24.66■■□□□ 1.549e-9■■■□□ 16.9
UPF1Q92900 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC24.49■■□□□ 1.519e-9■■■□□ 16.9
UPF1Q92900 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC22.86■■□□□ 1.259e-9■■■□□ 16.9
UPF1Q92900 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.969e-9■■■□□ 16.9
UPF1Q92900 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.969e-9■■■□□ 16.9
UPF1Q92900 RNASEK-206ENST00000552321 739 ntTSL 220.05■□□□□ 0.89e-9■■■□□ 16.9
UPF1Q92900 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC19.85■□□□□ 0.779e-9■■■□□ 16.9
UPF1Q92900 SLC39A10-205ENST00000430412 4478 ntTSL 26.97□□□□□ -1.291e-8■■■□□ 16.9
UPF1Q92900 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.511e-8■■■□□ 16.9
UPF1Q92900 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.841e-8■■■□□ 16.9
UPF1Q92900 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.015e-7■■■□□ 16.9
UPF1Q92900 AC091959.3-201ENST00000506502 3311 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.514e-7■■■□□ 16.9
UPF1Q92900 RBM27-201ENST00000265271 6451 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.834e-7■■■□□ 16.9
UPF1Q92900 ESPN-213ENST00000632803 455 ntTSL 329.51■■■□□ 2.311e-8■■■□□ 16.9
UPF1Q92900 ESPN-212ENST00000632593 506 ntTSL 227.86■■■□□ 2.051e-8■■■□□ 16.9
UPF1Q92900 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.461e-8■■■□□ 16.9
UPF1Q92900 LGALS8-206ENST00000366584 4369 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.547e-7■■■□□ 16.9
UPF1Q92900 LGALS8-208ENST00000416919 6097 ntTSL 5 BASIC11.04□□□□□ -0.647e-7■■■□□ 16.9
UPF1Q92900 LGALS8-219ENST00000526589 6420 ntAPPRIS P4 TSL 5 BASIC10.26□□□□□ -0.777e-7■■■□□ 16.9
UPF1Q92900 LGALS8-212ENST00000450372 6281 ntAPPRIS P4 TSL 1 (best) BASIC9.79□□□□□ -0.847e-7■■■□□ 16.9
UPF1Q92900 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC34.82■■■■□ 3.162e-6■■■□□ 16.9
UPF1Q92900 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC26.96■■□□□ 1.912e-6■■■□□ 16.9
UPF1Q92900 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.71■□□□□ 0.593e-7■■■□□ 16.9
UPF1Q92900 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.433e-7■■■□□ 16.9
UPF1Q92900 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC25.88■■□□□ 1.732e-7■■■□□ 16.9
UPF1Q92900 RABL6-208ENST00000464941 3361 ntTSL 217.01■□□□□ 0.312e-7■■■□□ 16.9
UPF1Q92900 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.342e-12■■■□□ 16.9
UPF1Q92900 RAPGEF6-208ENST00000509018 8357 ntAPPRIS P3 TSL 1 (best) BASIC7.59□□□□□ -1.196e-8■■■□□ 16.9
UPF1Q92900 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.745e-7■■■□□ 16.9
UPF1Q92900 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.75e-7■■■□□ 16.9
UPF1Q92900 SLC7A2-202ENST00000398090 7557 ntAPPRIS P3 TSL 1 (best) BASIC9.12□□□□□ -0.953e-8■■■□□ 16.9
UPF1Q92900 SLC7A2-201ENST00000004531 7560 ntTSL 1 (best) BASIC9.11□□□□□ -0.953e-8■■■□□ 16.9
UPF1Q92900 SLC7A2-204ENST00000494857 7622 ntAPPRIS ALT1 TSL 5 BASIC7.91□□□□□ -1.143e-8■■■□□ 16.9
UPF1Q92900 SLC7A2-203ENST00000470360 7638 ntAPPRIS P3 TSL 5 BASIC7.69□□□□□ -1.183e-8■■■□□ 16.9
UPF1Q92900 BCAP29-213ENST00000482371 943 ntTSL 328.35■■■□□ 2.133e-7■■■□□ 16.9
UPF1Q92900 BCAP29-201ENST00000005259 4572 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.153e-7■■■□□ 16.9
UPF1Q92900 BCAP29-216ENST00000491150 885 ntTSL 39.09□□□□□ -0.953e-7■■■□□ 16.9
UPF1Q92900 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.65□□□□□ -1.673e-7■■■□□ 16.9
UPF1Q92900 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC25.8■■□□□ 1.729e-13■■■□□ 16.9
UPF1Q92900 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.119e-13■■■□□ 16.9
UPF1Q92900 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC14.14□□□□□ -0.159e-13■■■□□ 16.9
UPF1Q92900 AGRN-203ENST00000461111 3385 ntTSL 1 (best)11.79□□□□□ -0.529e-13■■■□□ 16.9
UPF1Q92900 AZGP1-205ENST00000483612 679 ntTSL 320.65■□□□□ 0.92e-6■■■□□ 16.9
UPF1Q92900 AZGP1-203ENST00000419575 719 ntTSL 320.43■□□□□ 0.862e-6■■■□□ 16.9
UPF1Q92900 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC17.88■□□□□ 0.452e-6■■■□□ 16.9
UPF1Q92900 AZGP1-201ENST00000292401 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.362e-6■■■□□ 16.9
UPF1Q92900 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC31.83■■■□□ 2.691e-11■■■□□ 16.9
UPF1Q92900 MKNK2-207ENST00000588014 2413 ntTSL 218.43■□□□□ 0.542e-11■■■□□ 16.9
UPF1Q92900 MKNK2-208ENST00000589441 803 ntTSL 517.68■□□□□ 0.421e-11■■■□□ 16.9
UPF1Q92900 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC14.97□□□□□ -0.011e-11■■■□□ 16.9
UPF1Q92900 MKNK2-211ENST00000591142 875 ntTSL 2 BASIC13.72□□□□□ -0.211e-11■■■□□ 16.9
UPF1Q92900 MKNK2-206ENST00000587416 4093 ntTSL 212.78□□□□□ -0.361e-11■■■□□ 16.9
UPF1Q92900 MKNK2-213ENST00000591601 3582 ntAPPRIS P4 TSL 1 (best) BASIC11.74□□□□□ -0.531e-11■■■□□ 16.9
UPF1Q92900 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.314e-8■■■□□ 16.9
UPF1Q92900 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.314e-8■■■□□ 16.9
UPF1Q92900 AGPAT1-203ENST00000375107 2234 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.254e-8■■■□□ 16.9
UPF1Q92900 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.244e-8■■■□□ 16.9
UPF1Q92900 AGPAT1-204ENST00000395496 2103 ntAPPRIS P1 TSL 3 BASIC14.6□□□□□ -0.074e-8■■■□□ 16.9
UPF1Q92900 AGPAT1-206ENST00000395499 2496 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.444e-8■■■□□ 16.9
UPF1Q92900 AGPAT1-208ENST00000490711 2448 ntTSL 29.63□□□□□ -0.874e-8■■■□□ 16.9
UPF1Q92900 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.31e-9■■■□□ 16.9
UPF1Q92900 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC13.81□□□□□ -0.21e-9■■■□□ 16.9
UPF1Q92900 LIMK2-202ENST00000333611 3462 ntAPPRIS ALT1 TSL 1 (best) BASIC11.21□□□□□ -0.614e-8■■■□□ 16.8
UPF1Q92900 LIMK2-201ENST00000331728 3670 ntAPPRIS P4 TSL 1 (best) BASIC8.44□□□□□ -1.064e-8■■■□□ 16.8
UPF1Q92900 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC14.3□□□□□ -0.122e-6■■■□□ 16.8
UPF1Q92900 TICRR-203ENST00000561095 2367 ntTSL 1 (best)13.75□□□□□ -0.212e-6■■■□□ 16.8
UPF1Q92900 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.252e-6■■■□□ 16.8
UPF1Q92900 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC14□□□□□ -0.173e-7■■■□□ 16.8
UPF1Q92900 STX16-NPEPL1-202ENST00000530122 3433 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.333e-7■■■□□ 16.8
UPF1Q92900 STX16-202ENST00000355957 4897 ntTSL 2 BASIC12.34□□□□□ -0.433e-7■■■□□ 16.8
UPF1Q92900 STX16-205ENST00000361830 4318 ntTSL 5 BASIC12.07□□□□□ -0.483e-7■■■□□ 16.8
UPF1Q92900 STX16-203ENST00000358029 4329 ntAPPRIS ALT1 TSL 1 (best) BASIC11.09□□□□□ -0.633e-7■■■□□ 16.8
UPF1Q92900 STX16-204ENST00000359617 4273 ntTSL 5 BASIC10.83□□□□□ -0.683e-7■■■□□ 16.8
UPF1Q92900 STX16-206ENST00000371132 4552 ntTSL 1 (best) BASIC9.58□□□□□ -0.883e-7■■■□□ 16.8
UPF1Q92900 STX16-NPEPL1-201ENST00000413559 557 ntTSL 38.86□□□□□ -0.993e-7■■■□□ 16.8
UPF1Q92900 COPZ1-214ENST00000552218 797 ntTSL 5 BASIC16.75■□□□□ 0.271e-13■■■□□ 16.8
UPF1Q92900 COPZ1-213ENST00000551962 578 ntTSL 516.75■□□□□ 0.271e-13■■■□□ 16.8
UPF1Q92900 COPZ1-204ENST00000548281 554 ntTSL 415.38■□□□□ 0.051e-13■■■□□ 16.8
Retrieved 100 of 15,879 protein–RNA pairs in 178.8 ms