Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLRN3Q8NCR9 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC14.87□□□□□ -0.03
CLRN3Q8NCR9 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC14.87□□□□□ -0.03
CLRN3Q8NCR9 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC14.87□□□□□ -0.03
CLRN3Q8NCR9 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CLRN3Q8NCR9 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLRN3Q8NCR9 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
CLRN3Q8NCR9 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLRN3Q8NCR9 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLRN3Q8NCR9 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC14.87□□□□□ -0.03
CLRN3Q8NCR9 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLRN3Q8NCR9 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
CLRN3Q8NCR9 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLRN3Q8NCR9 PKD1P5-201ENST00000532415 10291 ntBASIC14.87□□□□□ -0.03
CLRN3Q8NCR9 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CLRN3Q8NCR9 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLRN3Q8NCR9 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLRN3Q8NCR9 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLRN3Q8NCR9 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLRN3Q8NCR9 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 C8orf49-201ENST00000525043 1968 ntBASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 LSM4-201ENST00000252816 986 ntTSL 2 BASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 AC245052.3-201ENST00000450182 901 ntBASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 AP005435.1-201ENST00000529293 1178 ntBASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 GRAMD4P7-201ENST00000578182 1232 ntBASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 LINC02228-204ENST00000642115 2962 ntBASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 CES3-203ENST00000543856 3178 ntTSL 2 BASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLRN3Q8NCR9 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
CLRN3Q8NCR9 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLRN3Q8NCR9 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CLRN3Q8NCR9 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CLRN3Q8NCR9 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
CLRN3Q8NCR9 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CLRN3Q8NCR9 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLRN3Q8NCR9 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC14.85□□□□□ -0.03
CLRN3Q8NCR9 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLRN3Q8NCR9 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLRN3Q8NCR9 LINC00602-201ENST00000629776 2065 ntBASIC14.85□□□□□ -0.03
CLRN3Q8NCR9 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLRN3Q8NCR9 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
CLRN3Q8NCR9 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLRN3Q8NCR9 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLRN3Q8NCR9 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
CLRN3Q8NCR9 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
CLRN3Q8NCR9 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLRN3Q8NCR9 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC14.85□□□□□ -0.03
CLRN3Q8NCR9 AK3-203ENST00000447596 705 ntTSL 2 BASIC14.85□□□□□ -0.03
CLRN3Q8NCR9 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC14.85□□□□□ -0.03
CLRN3Q8NCR9 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
CLRN3Q8NCR9 AL117332.1-201ENST00000622628 974 ntBASIC14.85□□□□□ -0.03
CLRN3Q8NCR9 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC14.85□□□□□ -0.03
CLRN3Q8NCR9 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC14.85□□□□□ -0.03
CLRN3Q8NCR9 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CLRN3Q8NCR9 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC14.85□□□□□ -0.03
CLRN3Q8NCR9 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
CLRN3Q8NCR9 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLRN3Q8NCR9 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CLRN3Q8NCR9 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC14.85□□□□□ -0.03
CLRN3Q8NCR9 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLRN3Q8NCR9 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLRN3Q8NCR9 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLRN3Q8NCR9 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CLRN3Q8NCR9 AC138028.4-201ENST00000564984 1845 ntBASIC14.85□□□□□ -0.03
CLRN3Q8NCR9 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLRN3Q8NCR9 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms