Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
VRK3Q8IV63 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
VRK3Q8IV63 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
VRK3Q8IV63 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VRK3Q8IV63 AC112777.1-201ENST00000540175 1423 ntBASIC18.18■□□□□ 0.5
VRK3Q8IV63 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VRK3Q8IV63 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC18.18■□□□□ 0.5
VRK3Q8IV63 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC18.18■□□□□ 0.5
VRK3Q8IV63 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC18.18■□□□□ 0.5
VRK3Q8IV63 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
VRK3Q8IV63 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
VRK3Q8IV63 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VRK3Q8IV63 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VRK3Q8IV63 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
VRK3Q8IV63 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
VRK3Q8IV63 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VRK3Q8IV63 AL137013.1-201ENST00000432946 1228 ntBASIC18.18■□□□□ 0.5
VRK3Q8IV63 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
VRK3Q8IV63 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC18.18■□□□□ 0.5
VRK3Q8IV63 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC18.18■□□□□ 0.5
VRK3Q8IV63 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC18.18■□□□□ 0.5
VRK3Q8IV63 PPOX-219ENST00000544598 813 ntTSL 2 BASIC18.18■□□□□ 0.5
VRK3Q8IV63 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC18.18■□□□□ 0.5
VRK3Q8IV63 CFL2-205ENST00000555765 632 ntTSL 2 BASIC18.18■□□□□ 0.5
VRK3Q8IV63 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC18.18■□□□□ 0.5
VRK3Q8IV63 NAT14-202ENST00000587400 416 ntTSL 5 BASIC18.18■□□□□ 0.5
VRK3Q8IV63 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VRK3Q8IV63 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
VRK3Q8IV63 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
VRK3Q8IV63 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VRK3Q8IV63 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VRK3Q8IV63 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VRK3Q8IV63 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VRK3Q8IV63 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VRK3Q8IV63 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VRK3Q8IV63 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VRK3Q8IV63 MYLKP1-201ENST00000509077 1580 ntBASIC18.17■□□□□ 0.5
VRK3Q8IV63 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
VRK3Q8IV63 AIRN-201ENST00000601203 4374 ntBASIC18.17■□□□□ 0.5
VRK3Q8IV63 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VRK3Q8IV63 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.17■□□□□ 0.5
VRK3Q8IV63 HOXB1-202ENST00000577092 1414 ntBASIC18.17■□□□□ 0.5
VRK3Q8IV63 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC18.17■□□□□ 0.5
VRK3Q8IV63 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VRK3Q8IV63 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
VRK3Q8IV63 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
VRK3Q8IV63 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
VRK3Q8IV63 LIN28AP1-201ENST00000429574 405 ntBASIC18.17■□□□□ 0.5
VRK3Q8IV63 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
VRK3Q8IV63 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VRK3Q8IV63 TK2-213ENST00000563369 882 ntTSL 5 BASIC18.17■□□□□ 0.5
VRK3Q8IV63 AL512604.3-201ENST00000569583 964 ntBASIC18.17■□□□□ 0.5
VRK3Q8IV63 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VRK3Q8IV63 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC18.17■□□□□ 0.5
VRK3Q8IV63 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VRK3Q8IV63 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
VRK3Q8IV63 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VRK3Q8IV63 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VRK3Q8IV63 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC18.17■□□□□ 0.5
VRK3Q8IV63 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
VRK3Q8IV63 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VRK3Q8IV63 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VRK3Q8IV63 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
VRK3Q8IV63 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VRK3Q8IV63 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VRK3Q8IV63 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VRK3Q8IV63 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VRK3Q8IV63 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
VRK3Q8IV63 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
VRK3Q8IV63 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
VRK3Q8IV63 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
VRK3Q8IV63 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC18.17■□□□□ 0.5
VRK3Q8IV63 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC18.17■□□□□ 0.5
VRK3Q8IV63 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.17■□□□□ 0.5
VRK3Q8IV63 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC18.17■□□□□ 0.5
VRK3Q8IV63 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC18.17■□□□□ 0.5
VRK3Q8IV63 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VRK3Q8IV63 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
VRK3Q8IV63 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
VRK3Q8IV63 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VRK3Q8IV63 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VRK3Q8IV63 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VRK3Q8IV63 LGALS8-AS1-201ENST00000487567 1457 ntBASIC18.16■□□□□ 0.5
VRK3Q8IV63 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VRK3Q8IV63 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VRK3Q8IV63 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VRK3Q8IV63 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
VRK3Q8IV63 ATP5G1P1-201ENST00000448724 379 ntBASIC18.16■□□□□ 0.5
VRK3Q8IV63 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC18.16■□□□□ 0.5
VRK3Q8IV63 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC18.16■□□□□ 0.5
VRK3Q8IV63 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC18.16■□□□□ 0.5
VRK3Q8IV63 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC18.16■□□□□ 0.5
VRK3Q8IV63 AC024243.1-201ENST00000609234 778 ntBASIC18.16■□□□□ 0.5
VRK3Q8IV63 AL023973.1-201ENST00000624619 620 ntBASIC18.16■□□□□ 0.5
VRK3Q8IV63 AC112497.1-201ENST00000624824 639 ntBASIC18.16■□□□□ 0.5
VRK3Q8IV63 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VRK3Q8IV63 CYP51A1P1-201ENST00000492267 1507 ntBASIC18.16■□□□□ 0.5
VRK3Q8IV63 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
VRK3Q8IV63 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.16■□□□□ 0.5
VRK3Q8IV63 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms