Protein–RNA interactions for Protein: Q5T4S7

UBR4, E3 ubiquitin-protein ligase UBR4, humanhuman

Predictions only

Length 5,183 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4Q5T4S7 TERT-206ENST00000508104 2486 ntTSL 5 BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 AC011840.4-201ENST00000578471 627 ntBASIC10.14□□□□□ -0.79
UBR4Q5T4S7 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 FO538757.1-201ENST00000623083 1397 ntBASIC10.14□□□□□ -0.79
UBR4Q5T4S7 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 GOLGA6L11P-201ENST00000417252 1298 ntBASIC10.14□□□□□ -0.79
UBR4Q5T4S7 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 FOS-206ENST00000555347 1280 ntTSL 2 BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 AC105339.1-204ENST00000636249 355 ntBASIC10.14□□□□□ -0.79
UBR4Q5T4S7 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 C1orf229-201ENST00000623686 2258 ntBASIC10.14□□□□□ -0.79
UBR4Q5T4S7 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC10.13□□□□□ -0.79
UBR4Q5T4S7 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
UBR4Q5T4S7 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
UBR4Q5T4S7 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
UBR4Q5T4S7 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
UBR4Q5T4S7 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
UBR4Q5T4S7 FXNP2-201ENST00000411625 547 ntBASIC10.13□□□□□ -0.79
UBR4Q5T4S7 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC10.13□□□□□ -0.79
UBR4Q5T4S7 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC10.13□□□□□ -0.79
UBR4Q5T4S7 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC10.13□□□□□ -0.79
UBR4Q5T4S7 AL592295.3-201ENST00000637155 863 ntTSL 5 BASIC10.13□□□□□ -0.79
UBR4Q5T4S7 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC10.13□□□□□ -0.79
UBR4Q5T4S7 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC10.13□□□□□ -0.79
UBR4Q5T4S7 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
UBR4Q5T4S7 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
UBR4Q5T4S7 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
UBR4Q5T4S7 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
UBR4Q5T4S7 AP000344.2-201ENST00000512987 629 ntBASIC10.13□□□□□ -0.79
UBR4Q5T4S7 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC10.13□□□□□ -0.79
UBR4Q5T4S7 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC10.13□□□□□ -0.79
UBR4Q5T4S7 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC10.13□□□□□ -0.79
UBR4Q5T4S7 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC10.13□□□□□ -0.79
UBR4Q5T4S7 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
UBR4Q5T4S7 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC10.13□□□□□ -0.79
UBR4Q5T4S7 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC10.13□□□□□ -0.79
UBR4Q5T4S7 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC10.13□□□□□ -0.79
UBR4Q5T4S7 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC10.13□□□□□ -0.79
UBR4Q5T4S7 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC10.13□□□□□ -0.79
UBR4Q5T4S7 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC10.13□□□□□ -0.79
UBR4Q5T4S7 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC10.13□□□□□ -0.79
UBR4Q5T4S7 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
UBR4Q5T4S7 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC10.13□□□□□ -0.79
UBR4Q5T4S7 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC10.13□□□□□ -0.79
UBR4Q5T4S7 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
UBR4Q5T4S7 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC10.13□□□□□ -0.79
UBR4Q5T4S7 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
UBR4Q5T4S7 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC10.13□□□□□ -0.79
UBR4Q5T4S7 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
UBR4Q5T4S7 BTBD6P1-201ENST00000412176 1267 ntBASIC10.13□□□□□ -0.79
UBR4Q5T4S7 LDHBP1-201ENST00000455730 1119 ntBASIC10.13□□□□□ -0.79
UBR4Q5T4S7 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC10.13□□□□□ -0.79
UBR4Q5T4S7 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC10.12□□□□□ -0.79
UBR4Q5T4S7 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
UBR4Q5T4S7 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
UBR4Q5T4S7 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC10.12□□□□□ -0.79
UBR4Q5T4S7 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
UBR4Q5T4S7 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
UBR4Q5T4S7 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC10.12□□□□□ -0.79
UBR4Q5T4S7 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC10.12□□□□□ -0.79
UBR4Q5T4S7 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC10.12□□□□□ -0.79
UBR4Q5T4S7 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC10.12□□□□□ -0.79
UBR4Q5T4S7 SDCCAG3P1-201ENST00000589292 1150 ntBASIC10.12□□□□□ -0.79
UBR4Q5T4S7 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC10.12□□□□□ -0.79
UBR4Q5T4S7 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
UBR4Q5T4S7 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC10.12□□□□□ -0.79
UBR4Q5T4S7 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC10.12□□□□□ -0.79
UBR4Q5T4S7 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC10.12□□□□□ -0.79
UBR4Q5T4S7 AC003669.1-201ENST00000334569 611 ntBASIC10.12□□□□□ -0.79
UBR4Q5T4S7 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
UBR4Q5T4S7 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC10.12□□□□□ -0.79
UBR4Q5T4S7 HNRNPUP1-201ENST00000554987 333 ntBASIC10.12□□□□□ -0.79
UBR4Q5T4S7 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC10.12□□□□□ -0.79
UBR4Q5T4S7 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC10.12□□□□□ -0.79
UBR4Q5T4S7 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
UBR4Q5T4S7 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC10.12□□□□□ -0.79
UBR4Q5T4S7 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC10.12□□□□□ -0.79
UBR4Q5T4S7 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
UBR4Q5T4S7 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC10.12□□□□□ -0.79
UBR4Q5T4S7 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC10.12□□□□□ -0.79
UBR4Q5T4S7 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms