Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC22.77■■□□□ 1.24
CCDC88AQ3V6T2 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC22.77■■□□□ 1.23
CCDC88AQ3V6T2 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC22.77■■□□□ 1.23
CCDC88AQ3V6T2 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC22.77■■□□□ 1.23
CCDC88AQ3V6T2 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC22.76■■□□□ 1.23
CCDC88AQ3V6T2 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC22.76■■□□□ 1.23
CCDC88AQ3V6T2 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC22.76■■□□□ 1.23
CCDC88AQ3V6T2 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
CCDC88AQ3V6T2 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
CCDC88AQ3V6T2 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
CCDC88AQ3V6T2 NAT14-202ENST00000587400 416 ntTSL 5 BASIC22.76■■□□□ 1.23
CCDC88AQ3V6T2 AL049840.3-201ENST00000602669 611 ntBASIC22.76■■□□□ 1.23
CCDC88AQ3V6T2 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC22.76■■□□□ 1.23
CCDC88AQ3V6T2 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC22.76■■□□□ 1.23
CCDC88AQ3V6T2 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC22.76■■□□□ 1.23
CCDC88AQ3V6T2 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC22.76■■□□□ 1.23
CCDC88AQ3V6T2 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
CCDC88AQ3V6T2 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC22.76■■□□□ 1.23
CCDC88AQ3V6T2 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC22.76■■□□□ 1.23
CCDC88AQ3V6T2 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
CCDC88AQ3V6T2 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC22.75■■□□□ 1.23
CCDC88AQ3V6T2 PBK-203ENST00000522944 1499 ntTSL 2 BASIC22.75■■□□□ 1.23
CCDC88AQ3V6T2 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
CCDC88AQ3V6T2 IGHGP-201ENST00000390555 1178 ntBASIC22.75■■□□□ 1.23
CCDC88AQ3V6T2 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC22.75■■□□□ 1.23
CCDC88AQ3V6T2 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
CCDC88AQ3V6T2 AC140113.2-201ENST00000604370 208 ntBASIC22.75■■□□□ 1.23
CCDC88AQ3V6T2 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC22.75■■□□□ 1.23
CCDC88AQ3V6T2 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
CCDC88AQ3V6T2 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
CCDC88AQ3V6T2 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC22.75■■□□□ 1.23
CCDC88AQ3V6T2 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC22.75■■□□□ 1.23
CCDC88AQ3V6T2 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
CCDC88AQ3V6T2 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC22.75■■□□□ 1.23
CCDC88AQ3V6T2 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
CCDC88AQ3V6T2 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC22.75■■□□□ 1.23
CCDC88AQ3V6T2 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC22.75■■□□□ 1.23
CCDC88AQ3V6T2 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC22.75■■□□□ 1.23
CCDC88AQ3V6T2 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC22.75■■□□□ 1.23
CCDC88AQ3V6T2 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC22.75■■□□□ 1.23
CCDC88AQ3V6T2 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC22.75■■□□□ 1.23
CCDC88AQ3V6T2 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC22.74■■□□□ 1.23
CCDC88AQ3V6T2 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC22.74■■□□□ 1.23
CCDC88AQ3V6T2 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
CCDC88AQ3V6T2 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
CCDC88AQ3V6T2 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
CCDC88AQ3V6T2 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC22.74■■□□□ 1.23
CCDC88AQ3V6T2 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC22.74■■□□□ 1.23
CCDC88AQ3V6T2 GGCT-205ENST00000409436 954 ntTSL 3 BASIC22.74■■□□□ 1.23
CCDC88AQ3V6T2 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC22.74■■□□□ 1.23
CCDC88AQ3V6T2 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC22.74■■□□□ 1.23
CCDC88AQ3V6T2 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC22.74■■□□□ 1.23
CCDC88AQ3V6T2 AC027796.2-201ENST00000575326 344 ntBASIC22.74■■□□□ 1.23
CCDC88AQ3V6T2 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC22.74■■□□□ 1.23
CCDC88AQ3V6T2 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC22.74■■□□□ 1.23
CCDC88AQ3V6T2 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
CCDC88AQ3V6T2 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
CCDC88AQ3V6T2 CCNC-219ENST00000627680 896 ntTSL 5 BASIC22.74■■□□□ 1.23
CCDC88AQ3V6T2 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
CCDC88AQ3V6T2 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC22.74■■□□□ 1.23
CCDC88AQ3V6T2 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC22.74■■□□□ 1.23
CCDC88AQ3V6T2 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC22.74■■□□□ 1.23
CCDC88AQ3V6T2 KRT8P3-201ENST00000519669 1449 ntBASIC22.74■■□□□ 1.23
CCDC88AQ3V6T2 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
CCDC88AQ3V6T2 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC22.74■■□□□ 1.23
CCDC88AQ3V6T2 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC22.74■■□□□ 1.23
CCDC88AQ3V6T2 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
CCDC88AQ3V6T2 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
CCDC88AQ3V6T2 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
CCDC88AQ3V6T2 UPF3AP3-201ENST00000420996 769 ntBASIC22.73■■□□□ 1.23
CCDC88AQ3V6T2 ELP6-205ENST00000439305 880 ntTSL 2 BASIC22.73■■□□□ 1.23
CCDC88AQ3V6T2 PAM16-208ENST00000573553 722 ntTSL 2 BASIC22.73■■□□□ 1.23
CCDC88AQ3V6T2 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC22.73■■□□□ 1.23
CCDC88AQ3V6T2 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
CCDC88AQ3V6T2 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC22.73■■□□□ 1.23
CCDC88AQ3V6T2 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
CCDC88AQ3V6T2 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC22.73■■□□□ 1.23
CCDC88AQ3V6T2 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC22.73■■□□□ 1.23
CCDC88AQ3V6T2 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
CCDC88AQ3V6T2 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
CCDC88AQ3V6T2 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
CCDC88AQ3V6T2 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC22.73■■□□□ 1.23
CCDC88AQ3V6T2 HNRNPDP1-201ENST00000439535 754 ntBASIC22.73■■□□□ 1.23
CCDC88AQ3V6T2 AC024563.2-201ENST00000603282 481 ntBASIC22.73■■□□□ 1.23
CCDC88AQ3V6T2 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC22.72■■□□□ 1.23
CCDC88AQ3V6T2 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
CCDC88AQ3V6T2 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC22.72■■□□□ 1.23
CCDC88AQ3V6T2 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC22.72■■□□□ 1.23
CCDC88AQ3V6T2 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC22.72■■□□□ 1.23
CCDC88AQ3V6T2 UBQLN4P1-201ENST00000461599 1801 ntBASIC22.72■■□□□ 1.23
CCDC88AQ3V6T2 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
CCDC88AQ3V6T2 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC22.72■■□□□ 1.23
CCDC88AQ3V6T2 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC22.72■■□□□ 1.23
CCDC88AQ3V6T2 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC22.72■■□□□ 1.23
CCDC88AQ3V6T2 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
CCDC88AQ3V6T2 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC22.72■■□□□ 1.23
CCDC88AQ3V6T2 FABP5-202ENST00000396359 986 ntTSL 5 BASIC22.72■■□□□ 1.23
CCDC88AQ3V6T2 RPS8P6-201ENST00000426177 609 ntBASIC22.72■■□□□ 1.23
CCDC88AQ3V6T2 AC098831.1-202ENST00000438821 336 ntBASIC22.72■■□□□ 1.23
CCDC88AQ3V6T2 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC22.72■■□□□ 1.23
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms