Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HIST1H1AQ02539 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
HIST1H1AQ02539 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HIST1H1AQ02539 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HIST1H1AQ02539 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC14.26□□□□□ -0.13
HIST1H1AQ02539 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
HIST1H1AQ02539 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HIST1H1AQ02539 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HIST1H1AQ02539 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC14.26□□□□□ -0.13
HIST1H1AQ02539 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
HIST1H1AQ02539 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC14.26□□□□□ -0.13
HIST1H1AQ02539 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HIST1H1AQ02539 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC14.26□□□□□ -0.13
HIST1H1AQ02539 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
HIST1H1AQ02539 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC14.26□□□□□ -0.13
HIST1H1AQ02539 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HIST1H1AQ02539 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC14.26□□□□□ -0.13
HIST1H1AQ02539 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC14.26□□□□□ -0.13
HIST1H1AQ02539 KRT18P6-201ENST00000555540 1265 ntBASIC14.26□□□□□ -0.13
HIST1H1AQ02539 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC14.26□□□□□ -0.13
HIST1H1AQ02539 TBCB-214ENST00000629269 413 ntTSL 5 BASIC14.26□□□□□ -0.13
HIST1H1AQ02539 HLA-A-209ENST00000638375 975 ntBASIC14.26□□□□□ -0.13
HIST1H1AQ02539 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HIST1H1AQ02539 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC14.26□□□□□ -0.13
HIST1H1AQ02539 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HIST1H1AQ02539 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HIST1H1AQ02539 FEM1AP3-201ENST00000403722 1741 ntBASIC14.26□□□□□ -0.13
HIST1H1AQ02539 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC14.26□□□□□ -0.13
HIST1H1AQ02539 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HIST1H1AQ02539 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HIST1H1AQ02539 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HIST1H1AQ02539 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
HIST1H1AQ02539 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC14.26□□□□□ -0.13
HIST1H1AQ02539 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
HIST1H1AQ02539 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HIST1H1AQ02539 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HIST1H1AQ02539 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HIST1H1AQ02539 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HIST1H1AQ02539 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HIST1H1AQ02539 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC14.25□□□□□ -0.13
HIST1H1AQ02539 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HIST1H1AQ02539 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HIST1H1AQ02539 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC14.25□□□□□ -0.13
HIST1H1AQ02539 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC14.25□□□□□ -0.13
HIST1H1AQ02539 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HIST1H1AQ02539 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC14.25□□□□□ -0.13
HIST1H1AQ02539 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HIST1H1AQ02539 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC14.25□□□□□ -0.13
HIST1H1AQ02539 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HIST1H1AQ02539 ESRRAP1-201ENST00000400596 1257 ntBASIC14.25□□□□□ -0.13
HIST1H1AQ02539 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC14.25□□□□□ -0.13
HIST1H1AQ02539 TSPY21P-201ENST00000433481 731 ntBASIC14.25□□□□□ -0.13
HIST1H1AQ02539 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC14.25□□□□□ -0.13
HIST1H1AQ02539 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC14.25□□□□□ -0.13
HIST1H1AQ02539 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC14.25□□□□□ -0.13
HIST1H1AQ02539 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
HIST1H1AQ02539 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC14.25□□□□□ -0.13
HIST1H1AQ02539 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC14.25□□□□□ -0.13
HIST1H1AQ02539 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
HIST1H1AQ02539 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC14.25□□□□□ -0.13
HIST1H1AQ02539 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
HIST1H1AQ02539 AC104581.1-202ENST00000635932 2618 ntBASIC14.25□□□□□ -0.13
HIST1H1AQ02539 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HIST1H1AQ02539 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
HIST1H1AQ02539 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HIST1H1AQ02539 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HIST1H1AQ02539 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
HIST1H1AQ02539 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
HIST1H1AQ02539 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC14.24□□□□□ -0.13
HIST1H1AQ02539 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC14.24□□□□□ -0.13
HIST1H1AQ02539 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
HIST1H1AQ02539 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC14.24□□□□□ -0.13
HIST1H1AQ02539 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
HIST1H1AQ02539 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HIST1H1AQ02539 AL512353.2-201ENST00000448759 1962 ntBASIC14.24□□□□□ -0.13
HIST1H1AQ02539 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
HIST1H1AQ02539 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HIST1H1AQ02539 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HIST1H1AQ02539 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HIST1H1AQ02539 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HIST1H1AQ02539 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HIST1H1AQ02539 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
HIST1H1AQ02539 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC14.24□□□□□ -0.13
HIST1H1AQ02539 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
HIST1H1AQ02539 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC14.24□□□□□ -0.13
HIST1H1AQ02539 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC14.24□□□□□ -0.13
HIST1H1AQ02539 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC14.24□□□□□ -0.13
HIST1H1AQ02539 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC14.24□□□□□ -0.13
HIST1H1AQ02539 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC14.24□□□□□ -0.13
HIST1H1AQ02539 MMAB-206ENST00000540016 945 ntTSL 3 BASIC14.24□□□□□ -0.13
HIST1H1AQ02539 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC14.24□□□□□ -0.13
HIST1H1AQ02539 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC14.24□□□□□ -0.13
HIST1H1AQ02539 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC14.24□□□□□ -0.13
HIST1H1AQ02539 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HIST1H1AQ02539 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
HIST1H1AQ02539 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HIST1H1AQ02539 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
HIST1H1AQ02539 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HIST1H1AQ02539 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC14.24□□□□□ -0.13
HIST1H1AQ02539 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms