Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
HOXA9P31269 AC079781.3-201ENST00000449110 356 ntBASIC19.35■□□□□ 0.69
HOXA9P31269 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC19.35■□□□□ 0.69
HOXA9P31269 AC099336.1-202ENST00000602961 463 ntBASIC19.35■□□□□ 0.69
HOXA9P31269 AC138894.3-201ENST00000603787 634 ntBASIC19.35■□□□□ 0.69
HOXA9P31269 AL353801.3-201ENST00000609898 542 ntBASIC19.35■□□□□ 0.69
HOXA9P31269 AC124864.1-201ENST00000623408 392 ntBASIC19.35■□□□□ 0.69
HOXA9P31269 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC19.35■□□□□ 0.69
HOXA9P31269 HEIH-201ENST00000623091 1652 ntBASIC19.35■□□□□ 0.69
HOXA9P31269 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.35■□□□□ 0.69
HOXA9P31269 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HOXA9P31269 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC19.35■□□□□ 0.69
HOXA9P31269 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
HOXA9P31269 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
HOXA9P31269 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
HOXA9P31269 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
HOXA9P31269 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC19.35■□□□□ 0.69
HOXA9P31269 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HOXA9P31269 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.34■□□□□ 0.69
HOXA9P31269 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
HOXA9P31269 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC19.34■□□□□ 0.69
HOXA9P31269 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HOXA9P31269 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXA9P31269 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXA9P31269 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC19.34■□□□□ 0.69
HOXA9P31269 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC19.34■□□□□ 0.69
HOXA9P31269 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC19.34■□□□□ 0.69
HOXA9P31269 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HOXA9P31269 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HOXA9P31269 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
HOXA9P31269 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC19.34■□□□□ 0.69
HOXA9P31269 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HOXA9P31269 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXA9P31269 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.34■□□□□ 0.69
HOXA9P31269 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HOXA9P31269 POLI-202ENST00000406285 2030 ntTSL 2 BASIC19.34■□□□□ 0.69
HOXA9P31269 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
HOXA9P31269 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXA9P31269 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXA9P31269 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC19.34■□□□□ 0.69
HOXA9P31269 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.33■□□□□ 0.69
HOXA9P31269 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.33■□□□□ 0.69
HOXA9P31269 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
HOXA9P31269 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
HOXA9P31269 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HOXA9P31269 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HOXA9P31269 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HOXA9P31269 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC19.33■□□□□ 0.68
HOXA9P31269 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
HOXA9P31269 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.68
HOXA9P31269 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.68
HOXA9P31269 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.68
HOXA9P31269 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HOXA9P31269 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.68
HOXA9P31269 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC19.33■□□□□ 0.68
HOXA9P31269 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC19.33■□□□□ 0.68
HOXA9P31269 AP002469.2-201ENST00000531724 424 ntBASIC19.33■□□□□ 0.68
HOXA9P31269 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC19.33■□□□□ 0.68
HOXA9P31269 AL662844.1-201ENST00000546340 181 ntBASIC19.33■□□□□ 0.68
HOXA9P31269 FICD-205ENST00000552758 603 ntTSL 2 BASIC19.33■□□□□ 0.68
HOXA9P31269 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
HOXA9P31269 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC19.33■□□□□ 0.68
HOXA9P31269 AL121912.1-201ENST00000603683 238 ntBASIC19.33■□□□□ 0.68
HOXA9P31269 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
HOXA9P31269 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.33■□□□□ 0.68
HOXA9P31269 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HOXA9P31269 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
HOXA9P31269 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC19.33■□□□□ 0.68
HOXA9P31269 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19.33■□□□□ 0.68
HOXA9P31269 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.33■□□□□ 0.68
HOXA9P31269 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
HOXA9P31269 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
HOXA9P31269 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC19.33■□□□□ 0.68
HOXA9P31269 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
HOXA9P31269 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.68
HOXA9P31269 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
HOXA9P31269 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC19.33■□□□□ 0.68
HOXA9P31269 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.68
HOXA9P31269 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
HOXA9P31269 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HOXA9P31269 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HOXA9P31269 AL357033.4-201ENST00000617703 1807 ntBASIC19.32■□□□□ 0.68
HOXA9P31269 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HOXA9P31269 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
HOXA9P31269 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.32■□□□□ 0.68
HOXA9P31269 DFFB-203ENST00000341385 572 ntTSL 5 BASIC19.32■□□□□ 0.68
HOXA9P31269 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC19.32■□□□□ 0.68
HOXA9P31269 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
HOXA9P31269 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HOXA9P31269 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC19.32■□□□□ 0.68
HOXA9P31269 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC19.32■□□□□ 0.68
HOXA9P31269 CDV3-207ENST00000508481 661 ntTSL 3 BASIC19.32■□□□□ 0.68
HOXA9P31269 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HOXA9P31269 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC19.32■□□□□ 0.68
HOXA9P31269 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC19.32■□□□□ 0.68
HOXA9P31269 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC19.32■□□□□ 0.68
HOXA9P31269 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
HOXA9P31269 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
HOXA9P31269 GXYLT1P4-201ENST00000613576 1192 ntBASIC19.32■□□□□ 0.68
HOXA9P31269 CCNC-219ENST00000627680 896 ntTSL 5 BASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 84.2 ms