Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SMARCA1P28370 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC21.34■■□□□ 1.01
SMARCA1P28370 DAP-202ENST00000432074 1048 ntTSL 2 BASIC21.34■■□□□ 1.01
SMARCA1P28370 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC21.34■■□□□ 1.01
SMARCA1P28370 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC21.34■■□□□ 1.01
SMARCA1P28370 TPM1-226ENST00000560959 925 ntTSL 2 BASIC21.34■■□□□ 1.01
SMARCA1P28370 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC21.34■■□□□ 1.01
SMARCA1P28370 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC21.34■■□□□ 1.01
SMARCA1P28370 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC21.34■■□□□ 1.01
SMARCA1P28370 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC21.34■■□□□ 1.01
SMARCA1P28370 AL121956.5-201ENST00000625261 221 ntBASIC21.34■■□□□ 1.01
SMARCA1P28370 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC21.34■■□□□ 1.01
SMARCA1P28370 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SMARCA1P28370 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC21.34■■□□□ 1.01
SMARCA1P28370 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
SMARCA1P28370 AC073592.3-201ENST00000625118 1834 ntBASIC21.34■■□□□ 1.01
SMARCA1P28370 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
SMARCA1P28370 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC21.33■■□□□ 1.01
SMARCA1P28370 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
SMARCA1P28370 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
SMARCA1P28370 AC009102.3-201ENST00000623118 1491 ntBASIC21.33■■□□□ 1.01
SMARCA1P28370 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC21.33■■□□□ 1.01
SMARCA1P28370 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
SMARCA1P28370 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC21.33■■□□□ 1.01
SMARCA1P28370 LINC01311-201ENST00000565162 1445 ntBASIC21.33■■□□□ 1.01
SMARCA1P28370 AC092597.1-201ENST00000487352 616 ntBASIC21.33■■□□□ 1.01
SMARCA1P28370 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC21.33■■□□□ 1.01
SMARCA1P28370 AL136038.3-201ENST00000561909 1096 ntBASIC21.33■■□□□ 1.01
SMARCA1P28370 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC21.33■■□□□ 1
SMARCA1P28370 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
SMARCA1P28370 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
SMARCA1P28370 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
SMARCA1P28370 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
SMARCA1P28370 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SMARCA1P28370 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
SMARCA1P28370 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC21.32■■□□□ 1
SMARCA1P28370 AC093503.3-201ENST00000624917 2352 ntBASIC21.32■■□□□ 1
SMARCA1P28370 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC21.32■■□□□ 1
SMARCA1P28370 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SMARCA1P28370 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC21.32■■□□□ 1
SMARCA1P28370 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SMARCA1P28370 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SMARCA1P28370 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC21.32■■□□□ 1
SMARCA1P28370 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC21.32■■□□□ 1
SMARCA1P28370 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
SMARCA1P28370 ZNF444P1-201ENST00000559497 298 ntBASIC21.32■■□□□ 1
SMARCA1P28370 AL136038.4-201ENST00000603606 1261 ntBASIC21.32■■□□□ 1
SMARCA1P28370 AC083849.1-201ENST00000615227 514 ntBASIC21.32■■□□□ 1
SMARCA1P28370 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC21.32■■□□□ 1
SMARCA1P28370 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SMARCA1P28370 SDHAP2-201ENST00000455183 2001 ntBASIC21.32■■□□□ 1
SMARCA1P28370 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
SMARCA1P28370 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
SMARCA1P28370 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SMARCA1P28370 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SMARCA1P28370 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
SMARCA1P28370 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC21.32■■□□□ 1
SMARCA1P28370 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SMARCA1P28370 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SMARCA1P28370 PBK-203ENST00000522944 1499 ntTSL 2 BASIC21.32■■□□□ 1
SMARCA1P28370 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SMARCA1P28370 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC21.31■■□□□ 1
SMARCA1P28370 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SMARCA1P28370 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC21.31■■□□□ 1
SMARCA1P28370 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
SMARCA1P28370 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC21.31■■□□□ 1
SMARCA1P28370 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC21.31■■□□□ 1
SMARCA1P28370 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
SMARCA1P28370 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC21.31■■□□□ 1
SMARCA1P28370 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC21.31■■□□□ 1
SMARCA1P28370 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SMARCA1P28370 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC21.31■■□□□ 1
SMARCA1P28370 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
SMARCA1P28370 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC21.31■■□□□ 1
SMARCA1P28370 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC21.3■■□□□ 1
SMARCA1P28370 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
SMARCA1P28370 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC21.3■■□□□ 1
SMARCA1P28370 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC21.3■■□□□ 1
SMARCA1P28370 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
SMARCA1P28370 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SMARCA1P28370 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC21.3■■□□□ 1
SMARCA1P28370 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC21.3■■□□□ 1
SMARCA1P28370 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SMARCA1P28370 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC21.3■■□□□ 1
SMARCA1P28370 MIR662-201ENST00000384847 95 ntBASIC21.3■■□□□ 1
SMARCA1P28370 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC21.3■■□□□ 1
SMARCA1P28370 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SMARCA1P28370 ISCU-203ENST00000431221 799 ntTSL 2 BASIC21.3■■□□□ 1
SMARCA1P28370 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC21.3■■□□□ 1
SMARCA1P28370 SPDYE13P-201ENST00000445314 798 ntBASIC21.3■■□□□ 1
SMARCA1P28370 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC21.3■■□□□ 1
SMARCA1P28370 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC21.3■■□□□ 1
SMARCA1P28370 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC21.3■■□□□ 1
SMARCA1P28370 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
SMARCA1P28370 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC21.3■■□□□ 1
SMARCA1P28370 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SMARCA1P28370 UROS-202ENST00000368778 1556 ntTSL 2 BASIC21.3■■□□□ 1
SMARCA1P28370 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SMARCA1P28370 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC21.3■■□□□ 1
SMARCA1P28370 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms