Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
MSH5O43196 OR6C71P-202ENST00000641886 1107 ntBASIC25.26■■□□□ 1.63
MSH5O43196 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
MSH5O43196 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC25.26■■□□□ 1.63
MSH5O43196 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
MSH5O43196 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
MSH5O43196 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
MSH5O43196 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
MSH5O43196 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC25.25■■□□□ 1.63
MSH5O43196 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC25.25■■□□□ 1.63
MSH5O43196 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
MSH5O43196 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
MSH5O43196 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC25.25■■□□□ 1.63
MSH5O43196 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC25.25■■□□□ 1.63
MSH5O43196 CD70-202ENST00000423145 881 ntTSL 2 BASIC25.25■■□□□ 1.63
MSH5O43196 AL445218.1-202ENST00000427695 845 ntTSL 3 BASIC25.25■■□□□ 1.63
MSH5O43196 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC25.25■■□□□ 1.63
MSH5O43196 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC25.25■■□□□ 1.63
MSH5O43196 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC25.25■■□□□ 1.63
MSH5O43196 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC25.25■■□□□ 1.63
MSH5O43196 AC090568.1-201ENST00000509499 856 ntBASIC25.25■■□□□ 1.63
MSH5O43196 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC25.25■■□□□ 1.63
MSH5O43196 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
MSH5O43196 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC25.25■■□□□ 1.63
MSH5O43196 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC25.25■■□□□ 1.63
MSH5O43196 GPX4-207ENST00000589115 812 ntTSL 2 BASIC25.25■■□□□ 1.63
MSH5O43196 AC090953.1-201ENST00000604305 1092 ntBASIC25.25■■□□□ 1.63
MSH5O43196 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC25.25■■□□□ 1.63
MSH5O43196 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC25.25■■□□□ 1.63
MSH5O43196 AL391597.1-201ENST00000618707 694 ntBASIC25.25■■□□□ 1.63
MSH5O43196 MIR2861-201ENST00000636310 90 ntBASIC25.25■■□□□ 1.63
MSH5O43196 IER3-202ENST00000376377 1350 ntBASIC25.25■■□□□ 1.63
MSH5O43196 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
MSH5O43196 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC25.25■■□□□ 1.63
MSH5O43196 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC25.25■■□□□ 1.63
MSH5O43196 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
MSH5O43196 AC106820.2-201ENST00000563775 3264 ntBASIC25.25■■□□□ 1.63
MSH5O43196 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
MSH5O43196 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
MSH5O43196 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC25.24■■□□□ 1.63
MSH5O43196 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC25.24■■□□□ 1.63
MSH5O43196 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
MSH5O43196 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC25.24■■□□□ 1.63
MSH5O43196 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC25.24■■□□□ 1.63
MSH5O43196 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC25.24■■□□□ 1.63
MSH5O43196 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC25.24■■□□□ 1.63
MSH5O43196 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
MSH5O43196 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC25.24■■□□□ 1.63
MSH5O43196 AP003041.2-201ENST00000525666 1180 ntBASIC25.24■■□□□ 1.63
MSH5O43196 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC25.24■■□□□ 1.63
MSH5O43196 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
MSH5O43196 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
MSH5O43196 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC25.24■■□□□ 1.63
MSH5O43196 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC25.24■■□□□ 1.63
MSH5O43196 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC25.24■■□□□ 1.63
MSH5O43196 AC121338.2-201ENST00000622535 1744 ntBASIC25.23■■□□□ 1.63
MSH5O43196 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
MSH5O43196 AP006587.1-201ENST00000534129 1502 ntBASIC25.23■■□□□ 1.63
MSH5O43196 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC25.23■■□□□ 1.63
MSH5O43196 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
MSH5O43196 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC25.23■■□□□ 1.63
MSH5O43196 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
MSH5O43196 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC25.23■■□□□ 1.63
MSH5O43196 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC25.23■■□□□ 1.63
MSH5O43196 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
MSH5O43196 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC25.23■■□□□ 1.63
MSH5O43196 COX11P1-201ENST00000489116 835 ntBASIC25.23■■□□□ 1.63
MSH5O43196 RAB30-AS1-205ENST00000530270 1116 ntTSL 2 BASIC25.23■■□□□ 1.63
MSH5O43196 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
MSH5O43196 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC25.23■■□□□ 1.63
MSH5O43196 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC25.23■■□□□ 1.63
MSH5O43196 AC130324.2-201ENST00000580873 638 ntTSL 2 BASIC25.23■■□□□ 1.63
MSH5O43196 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC25.23■■□□□ 1.63
MSH5O43196 AL138966.2-201ENST00000621997 464 ntBASIC25.23■■□□□ 1.63
MSH5O43196 AC131212.4-201ENST00000623606 975 ntBASIC25.23■■□□□ 1.63
MSH5O43196 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
MSH5O43196 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
MSH5O43196 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
MSH5O43196 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC25.23■■□□□ 1.63
MSH5O43196 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC25.23■■□□□ 1.63
MSH5O43196 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC25.22■■□□□ 1.63
MSH5O43196 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
MSH5O43196 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
MSH5O43196 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC25.22■■□□□ 1.63
MSH5O43196 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
MSH5O43196 HACL1-206ENST00000435217 1269 ntTSL 2 BASIC25.22■■□□□ 1.63
MSH5O43196 AC098483.1-202ENST00000436515 967 ntTSL 2 BASIC25.22■■□□□ 1.63
MSH5O43196 AL359644.1-204ENST00000440807 440 ntTSL 3 BASIC25.22■■□□□ 1.63
MSH5O43196 HCG4P8-203ENST00000443049 980 ntBASIC25.22■■□□□ 1.63
MSH5O43196 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC25.22■■□□□ 1.63
MSH5O43196 LARP7P4-201ENST00000481075 878 ntBASIC25.22■■□□□ 1.63
MSH5O43196 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC25.22■■□□□ 1.63
MSH5O43196 FAM86EP-206ENST00000510506 987 ntBASIC25.22■■□□□ 1.63
MSH5O43196 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC25.22■■□□□ 1.63
MSH5O43196 OR4A18P-201ENST00000529103 1088 ntBASIC25.22■■□□□ 1.63
MSH5O43196 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC25.22■■□□□ 1.63
MSH5O43196 AC116562.4-202ENST00000641738 218 ntBASIC25.22■■□□□ 1.63
MSH5O43196 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
MSH5O43196 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC25.22■■□□□ 1.63
MSH5O43196 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC25.22■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms