Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 CLN6-204ENST00000564752 900 ntTSL 3 BASIC20.89■□□□□ 0.93
MSH4O15457 AC083849.1-201ENST00000615227 514 ntBASIC20.89■□□□□ 0.93
MSH4O15457 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
MSH4O15457 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
MSH4O15457 AC093503.3-201ENST00000624917 2352 ntBASIC20.89■□□□□ 0.93
MSH4O15457 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
MSH4O15457 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
MSH4O15457 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
MSH4O15457 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC20.89■□□□□ 0.93
MSH4O15457 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC20.89■□□□□ 0.93
MSH4O15457 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
MSH4O15457 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MSH4O15457 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MSH4O15457 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
MSH4O15457 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
MSH4O15457 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
MSH4O15457 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC20.88■□□□□ 0.93
MSH4O15457 HBZP1-201ENST00000354915 429 ntBASIC20.88■□□□□ 0.93
MSH4O15457 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC20.88■□□□□ 0.93
MSH4O15457 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
MSH4O15457 ISCU-203ENST00000431221 799 ntTSL 2 BASIC20.88■□□□□ 0.93
MSH4O15457 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC20.88■□□□□ 0.93
MSH4O15457 LY6E-213ENST00000522528 606 ntTSL 3 BASIC20.88■□□□□ 0.93
MSH4O15457 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC20.88■□□□□ 0.93
MSH4O15457 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC20.88■□□□□ 0.93
MSH4O15457 FGF14-AS2-201ENST00000606448 1074 ntBASIC20.88■□□□□ 0.93
MSH4O15457 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
MSH4O15457 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MSH4O15457 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
MSH4O15457 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
MSH4O15457 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
MSH4O15457 MYLKP1-201ENST00000509077 1580 ntBASIC20.88■□□□□ 0.93
MSH4O15457 AL163051.1-201ENST00000569214 1512 ntBASIC20.88■□□□□ 0.93
MSH4O15457 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MSH4O15457 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC20.88■□□□□ 0.93
MSH4O15457 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC20.87■□□□□ 0.93
MSH4O15457 LINC01311-201ENST00000565162 1445 ntBASIC20.87■□□□□ 0.93
MSH4O15457 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
MSH4O15457 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
MSH4O15457 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC20.87■□□□□ 0.93
MSH4O15457 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MSH4O15457 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
MSH4O15457 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
MSH4O15457 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MSH4O15457 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
MSH4O15457 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC20.87■□□□□ 0.93
MSH4O15457 SPDYE13P-201ENST00000445314 798 ntBASIC20.87■□□□□ 0.93
MSH4O15457 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MSH4O15457 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC20.87■□□□□ 0.93
MSH4O15457 TPM1-226ENST00000560959 925 ntTSL 2 BASIC20.87■□□□□ 0.93
MSH4O15457 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC20.87■□□□□ 0.93
MSH4O15457 USF2-205ENST00000594064 1179 ntTSL 2 BASIC20.87■□□□□ 0.93
MSH4O15457 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC20.87■□□□□ 0.93
MSH4O15457 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC20.87■□□□□ 0.93
MSH4O15457 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
MSH4O15457 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC20.87■□□□□ 0.93
MSH4O15457 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
MSH4O15457 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC20.87■□□□□ 0.93
MSH4O15457 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
MSH4O15457 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
MSH4O15457 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC20.87■□□□□ 0.93
MSH4O15457 AC099343.3-201ENST00000605834 2503 ntBASIC20.86■□□□□ 0.93
MSH4O15457 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
MSH4O15457 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
MSH4O15457 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
MSH4O15457 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MSH4O15457 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MSH4O15457 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
MSH4O15457 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
MSH4O15457 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC20.86■□□□□ 0.93
MSH4O15457 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC20.86■□□□□ 0.93
MSH4O15457 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
MSH4O15457 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
MSH4O15457 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
MSH4O15457 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MSH4O15457 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MSH4O15457 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
MSH4O15457 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC20.86■□□□□ 0.93
MSH4O15457 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC20.86■□□□□ 0.93
MSH4O15457 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC20.86■□□□□ 0.93
MSH4O15457 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MSH4O15457 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
MSH4O15457 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
MSH4O15457 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
MSH4O15457 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC20.85■□□□□ 0.93
MSH4O15457 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC20.85■□□□□ 0.93
MSH4O15457 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MSH4O15457 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MSH4O15457 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC20.85■□□□□ 0.93
MSH4O15457 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC20.85■□□□□ 0.93
MSH4O15457 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
MSH4O15457 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MSH4O15457 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
MSH4O15457 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MSH4O15457 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC20.85■□□□□ 0.93
MSH4O15457 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC20.85■□□□□ 0.93
MSH4O15457 RNF146-204ENST00000476956 884 ntTSL 2 BASIC20.85■□□□□ 0.93
MSH4O15457 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC20.85■□□□□ 0.93
MSH4O15457 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC20.85■□□□□ 0.93
MSH4O15457 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms