Protein–RNA interactions for Protein: O14646

CHD1, Chromodomain-helicase-DNA-binding protein 1, humanhuman

Predictions only

Length 1,710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1O14646 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC30.08■■■□□ 2.41
CHD1O14646 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC30.08■■■□□ 2.41
CHD1O14646 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC30.08■■■□□ 2.41
CHD1O14646 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
CHD1O14646 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC30.08■■■□□ 2.41
CHD1O14646 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC30.08■■■□□ 2.41
CHD1O14646 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
CHD1O14646 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC30.08■■■□□ 2.41
CHD1O14646 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC30.08■■■□□ 2.41
CHD1O14646 MIR4469-201ENST00000583919 79 ntBASIC30.08■■■□□ 2.41
CHD1O14646 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
CHD1O14646 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
CHD1O14646 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC30.07■■■□□ 2.4
CHD1O14646 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
CHD1O14646 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
CHD1O14646 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC30.07■■■□□ 2.4
CHD1O14646 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
CHD1O14646 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC30.07■■■□□ 2.4
CHD1O14646 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
CHD1O14646 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC30.07■■■□□ 2.4
CHD1O14646 AC005829.1-201ENST00000570002 483 ntBASIC30.07■■■□□ 2.4
CHD1O14646 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC30.07■■■□□ 2.4
CHD1O14646 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
CHD1O14646 LINC01521-201ENST00000504184 1943 ntBASIC30.06■■■□□ 2.4
CHD1O14646 AC020907.5-201ENST00000624372 1936 ntBASIC30.06■■■□□ 2.4
CHD1O14646 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
CHD1O14646 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
CHD1O14646 KRT18P27-201ENST00000427733 1299 ntBASIC30.06■■■□□ 2.4
CHD1O14646 BCRP1-201ENST00000444246 691 ntBASIC30.06■■■□□ 2.4
CHD1O14646 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC30.06■■■□□ 2.4
CHD1O14646 AP002472.1-201ENST00000577490 586 ntBASIC30.06■■■□□ 2.4
CHD1O14646 AL096865.1-201ENST00000606796 927 ntBASIC30.06■■■□□ 2.4
CHD1O14646 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC30.06■■■□□ 2.4
CHD1O14646 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC30.06■■■□□ 2.4
CHD1O14646 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
CHD1O14646 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC30.06■■■□□ 2.4
CHD1O14646 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC30.06■■■□□ 2.4
CHD1O14646 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC30.05■■■□□ 2.4
CHD1O14646 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
CHD1O14646 AL357033.4-201ENST00000617703 1807 ntBASIC30.05■■■□□ 2.4
CHD1O14646 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
CHD1O14646 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC30.05■■■□□ 2.4
CHD1O14646 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
CHD1O14646 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
CHD1O14646 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC30.05■■■□□ 2.4
CHD1O14646 LAGE3P1-201ENST00000425356 484 ntBASIC30.05■■■□□ 2.4
CHD1O14646 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC30.05■■■□□ 2.4
CHD1O14646 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC30.05■■■□□ 2.4
CHD1O14646 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC30.05■■■□□ 2.4
CHD1O14646 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
CHD1O14646 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC30.05■■■□□ 2.4
CHD1O14646 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC30.05■■■□□ 2.4
CHD1O14646 AC108751.1-201ENST00000490852 363 ntBASIC30.05■■■□□ 2.4
CHD1O14646 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
CHD1O14646 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC30.05■■■□□ 2.4
CHD1O14646 TEX21P-204ENST00000641479 1693 ntBASIC30.04■■■□□ 2.4
CHD1O14646 DET1-207ENST00000564406 2315 ntTSL 2 BASIC30.04■■■□□ 2.4
CHD1O14646 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
CHD1O14646 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC30.04■■■□□ 2.4
CHD1O14646 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
CHD1O14646 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
CHD1O14646 SNHG9-202ENST00000564014 471 ntBASIC30.04■■■□□ 2.4
CHD1O14646 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
CHD1O14646 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC30.04■■■□□ 2.4
CHD1O14646 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
CHD1O14646 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
CHD1O14646 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
CHD1O14646 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC30.03■■■□□ 2.4
CHD1O14646 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC30.03■■■□□ 2.4
CHD1O14646 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
CHD1O14646 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
CHD1O14646 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC30.03■■■□□ 2.4
CHD1O14646 DANCR-204ENST00000444958 709 ntTSL 3 BASIC30.03■■■□□ 2.4
CHD1O14646 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC30.03■■■□□ 2.4
CHD1O14646 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC30.03■■■□□ 2.4
CHD1O14646 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC30.03■■■□□ 2.4
CHD1O14646 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC30.03■■■□□ 2.4
CHD1O14646 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
CHD1O14646 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC30.03■■■□□ 2.4
CHD1O14646 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC30.03■■■□□ 2.4
CHD1O14646 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
CHD1O14646 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC30.02■■■□□ 2.4
CHD1O14646 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC30.02■■■□□ 2.4
CHD1O14646 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
CHD1O14646 TSEN15P1-201ENST00000423257 515 ntBASIC30.02■■■□□ 2.4
CHD1O14646 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC30.02■■■□□ 2.4
CHD1O14646 CCDC74BP1-201ENST00000508880 1123 ntBASIC30.02■■■□□ 2.4
CHD1O14646 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC30.02■■■□□ 2.4
CHD1O14646 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC30.02■■■□□ 2.4
CHD1O14646 GREM1-201ENST00000560677 623 ntTSL 4 BASIC30.02■■■□□ 2.4
CHD1O14646 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC30.02■■■□□ 2.4
CHD1O14646 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC30.02■■■□□ 2.4
CHD1O14646 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
CHD1O14646 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
CHD1O14646 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC30.02■■■□□ 2.4
CHD1O14646 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC30.02■■■□□ 2.4
CHD1O14646 ETFA-208ENST00000559602 792 ntTSL 3 BASIC30.02■■■□□ 2.4
CHD1O14646 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC30.01■■■□□ 2.4
CHD1O14646 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC30.01■■■□□ 2.4
CHD1O14646 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms