Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL6A5A8TX70 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
COL6A5A8TX70 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC14.4□□□□□ -0.1
COL6A5A8TX70 WWC2-AS2-201ENST00000578387 2183 ntBASIC14.4□□□□□ -0.1
COL6A5A8TX70 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL6A5A8TX70 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
COL6A5A8TX70 AC099343.3-201ENST00000605834 2503 ntBASIC14.4□□□□□ -0.1
COL6A5A8TX70 MRPL20P1-201ENST00000400819 433 ntBASIC14.4□□□□□ -0.1
COL6A5A8TX70 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC14.4□□□□□ -0.1
COL6A5A8TX70 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC14.4□□□□□ -0.1
COL6A5A8TX70 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL6A5A8TX70 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL6A5A8TX70 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL6A5A8TX70 RPS29-206ENST00000557111 488 ntTSL 2 BASIC14.4□□□□□ -0.1
COL6A5A8TX70 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC14.4□□□□□ -0.1
COL6A5A8TX70 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
COL6A5A8TX70 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A5A8TX70 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
COL6A5A8TX70 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC14.39□□□□□ -0.11
COL6A5A8TX70 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A5A8TX70 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
COL6A5A8TX70 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A5A8TX70 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A5A8TX70 AC093214.1-201ENST00000511688 1107 ntBASIC14.39□□□□□ -0.11
COL6A5A8TX70 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
COL6A5A8TX70 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC14.39□□□□□ -0.11
COL6A5A8TX70 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC14.39□□□□□ -0.11
COL6A5A8TX70 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A5A8TX70 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC14.39□□□□□ -0.11
COL6A5A8TX70 BID-203ENST00000399765 1879 ntTSL 2 BASIC14.39□□□□□ -0.11
COL6A5A8TX70 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC14.39□□□□□ -0.11
COL6A5A8TX70 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC14.39□□□□□ -0.11
COL6A5A8TX70 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
COL6A5A8TX70 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC14.39□□□□□ -0.11
COL6A5A8TX70 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A5A8TX70 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A5A8TX70 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A5A8TX70 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A5A8TX70 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC14.39□□□□□ -0.11
COL6A5A8TX70 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A5A8TX70 BAD-202ENST00000394531 631 ntTSL 3 BASIC14.39□□□□□ -0.11
COL6A5A8TX70 LAGE3P1-201ENST00000425356 484 ntBASIC14.39□□□□□ -0.11
COL6A5A8TX70 KRT18P27-201ENST00000427733 1299 ntBASIC14.39□□□□□ -0.11
COL6A5A8TX70 CEND1P1-201ENST00000451006 455 ntBASIC14.39□□□□□ -0.11
COL6A5A8TX70 NMU-203ENST00000507338 658 ntTSL 3 BASIC14.39□□□□□ -0.11
COL6A5A8TX70 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC14.39□□□□□ -0.11
COL6A5A8TX70 GUSBP5-202ENST00000510805 1989 ntBASIC14.39□□□□□ -0.11
COL6A5A8TX70 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A5A8TX70 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC14.39□□□□□ -0.11
COL6A5A8TX70 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A5A8TX70 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A5A8TX70 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
COL6A5A8TX70 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A5A8TX70 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC14.38□□□□□ -0.11
COL6A5A8TX70 OR8S1-201ENST00000310194 1080 ntBASIC14.38□□□□□ -0.11
COL6A5A8TX70 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC14.38□□□□□ -0.11
COL6A5A8TX70 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC14.38□□□□□ -0.11
COL6A5A8TX70 OARD1-208ENST00000469104 704 ntTSL 2 BASIC14.38□□□□□ -0.11
COL6A5A8TX70 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC14.38□□□□□ -0.11
COL6A5A8TX70 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
COL6A5A8TX70 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC14.38□□□□□ -0.11
COL6A5A8TX70 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC14.38□□□□□ -0.11
COL6A5A8TX70 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A5A8TX70 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC14.38□□□□□ -0.11
COL6A5A8TX70 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A5A8TX70 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A5A8TX70 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A5A8TX70 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A5A8TX70 INTS4P1-201ENST00000438455 1935 ntBASIC14.38□□□□□ -0.11
COL6A5A8TX70 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
COL6A5A8TX70 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A5A8TX70 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A5A8TX70 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A5A8TX70 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC14.38□□□□□ -0.11
COL6A5A8TX70 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A5A8TX70 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A5A8TX70 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A5A8TX70 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A5A8TX70 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC14.38□□□□□ -0.11
COL6A5A8TX70 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC14.38□□□□□ -0.11
COL6A5A8TX70 RNA5SP421-201ENST00000516864 134 ntBASIC14.38□□□□□ -0.11
COL6A5A8TX70 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
COL6A5A8TX70 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC14.38□□□□□ -0.11
COL6A5A8TX70 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC14.38□□□□□ -0.11
COL6A5A8TX70 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL6A5A8TX70 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL6A5A8TX70 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL6A5A8TX70 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL6A5A8TX70 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL6A5A8TX70 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL6A5A8TX70 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL6A5A8TX70 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC14.37□□□□□ -0.11
COL6A5A8TX70 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
COL6A5A8TX70 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC14.37□□□□□ -0.11
COL6A5A8TX70 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC14.37□□□□□ -0.11
COL6A5A8TX70 DUT-210ENST00000559935 569 ntTSL 3 BASIC14.37□□□□□ -0.11
COL6A5A8TX70 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC14.37□□□□□ -0.11
COL6A5A8TX70 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC14.37□□□□□ -0.11
COL6A5A8TX70 AL138831.2-201ENST00000606564 490 ntBASIC14.37□□□□□ -0.11
COL6A5A8TX70 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms