Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC19.49■□□□□ 0.71
USP3Q9Y6I4 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC19.48■□□□□ 0.71
USP3Q9Y6I4 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC19.48■□□□□ 0.71
USP3Q9Y6I4 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP3Q9Y6I4 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC19.48■□□□□ 0.71
USP3Q9Y6I4 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC19.48■□□□□ 0.71
USP3Q9Y6I4 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP3Q9Y6I4 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC19.48■□□□□ 0.71
USP3Q9Y6I4 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
USP3Q9Y6I4 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.48■□□□□ 0.71
USP3Q9Y6I4 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
USP3Q9Y6I4 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP3Q9Y6I4 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
USP3Q9Y6I4 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
USP3Q9Y6I4 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
USP3Q9Y6I4 RMI2-205ENST00000576027 818 ntTSL 2 BASIC19.48■□□□□ 0.71
USP3Q9Y6I4 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
USP3Q9Y6I4 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC19.48■□□□□ 0.71
USP3Q9Y6I4 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
USP3Q9Y6I4 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP3Q9Y6I4 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC19.48■□□□□ 0.71
USP3Q9Y6I4 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP3Q9Y6I4 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP3Q9Y6I4 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP3Q9Y6I4 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
USP3Q9Y6I4 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
USP3Q9Y6I4 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
USP3Q9Y6I4 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP3Q9Y6I4 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP3Q9Y6I4 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC19.47■□□□□ 0.71
USP3Q9Y6I4 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP3Q9Y6I4 ARMC10P1-201ENST00000313754 855 ntBASIC19.47■□□□□ 0.71
USP3Q9Y6I4 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP3Q9Y6I4 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC19.47■□□□□ 0.71
USP3Q9Y6I4 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC19.47■□□□□ 0.71
USP3Q9Y6I4 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP3Q9Y6I4 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC19.47■□□□□ 0.71
USP3Q9Y6I4 TPM1-226ENST00000560959 925 ntTSL 2 BASIC19.47■□□□□ 0.71
USP3Q9Y6I4 NT5C-211ENST00000582170 653 ntTSL 3 BASIC19.47■□□□□ 0.71
USP3Q9Y6I4 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
USP3Q9Y6I4 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
USP3Q9Y6I4 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC19.47■□□□□ 0.71
USP3Q9Y6I4 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC19.47■□□□□ 0.71
USP3Q9Y6I4 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP3Q9Y6I4 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP3Q9Y6I4 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
USP3Q9Y6I4 MED25-212ENST00000618715 1467 ntTSL 5 BASIC19.47■□□□□ 0.71
USP3Q9Y6I4 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP3Q9Y6I4 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
USP3Q9Y6I4 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC19.47■□□□□ 0.71
USP3Q9Y6I4 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP3Q9Y6I4 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP3Q9Y6I4 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP3Q9Y6I4 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC19.46■□□□□ 0.71
USP3Q9Y6I4 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USP3Q9Y6I4 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC19.46■□□□□ 0.71
USP3Q9Y6I4 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP3Q9Y6I4 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC19.46■□□□□ 0.71
USP3Q9Y6I4 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP3Q9Y6I4 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP3Q9Y6I4 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP3Q9Y6I4 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USP3Q9Y6I4 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC19.46■□□□□ 0.71
USP3Q9Y6I4 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
USP3Q9Y6I4 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
USP3Q9Y6I4 COPE-203ENST00000351079 907 ntTSL 2 BASIC19.46■□□□□ 0.71
USP3Q9Y6I4 AP000593.1-201ENST00000393668 712 ntBASIC19.46■□□□□ 0.71
USP3Q9Y6I4 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USP3Q9Y6I4 AC112907.2-201ENST00000448639 330 ntBASIC19.46■□□□□ 0.71
USP3Q9Y6I4 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC19.46■□□□□ 0.71
USP3Q9Y6I4 LY6E-213ENST00000522528 606 ntTSL 3 BASIC19.46■□□□□ 0.71
USP3Q9Y6I4 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USP3Q9Y6I4 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC19.46■□□□□ 0.71
USP3Q9Y6I4 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USP3Q9Y6I4 AL157888.1-201ENST00000631930 593 ntBASIC19.46■□□□□ 0.71
USP3Q9Y6I4 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC19.46■□□□□ 0.71
USP3Q9Y6I4 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP3Q9Y6I4 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP3Q9Y6I4 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
USP3Q9Y6I4 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC19.46■□□□□ 0.71
USP3Q9Y6I4 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USP3Q9Y6I4 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP3Q9Y6I4 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.7
USP3Q9Y6I4 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
USP3Q9Y6I4 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP3Q9Y6I4 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC19.45■□□□□ 0.7
USP3Q9Y6I4 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP3Q9Y6I4 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
USP3Q9Y6I4 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC19.45■□□□□ 0.7
USP3Q9Y6I4 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC19.45■□□□□ 0.7
USP3Q9Y6I4 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC19.45■□□□□ 0.7
USP3Q9Y6I4 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP3Q9Y6I4 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC19.45■□□□□ 0.7
USP3Q9Y6I4 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC19.45■□□□□ 0.7
USP3Q9Y6I4 AL671277.2-201ENST00000458060 996 ntBASIC19.45■□□□□ 0.7
USP3Q9Y6I4 CLN6-204ENST00000564752 900 ntTSL 3 BASIC19.45■□□□□ 0.7
USP3Q9Y6I4 AC087388.1-201ENST00000571370 1112 ntBASIC19.45■□□□□ 0.7
USP3Q9Y6I4 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP3Q9Y6I4 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC19.45■□□□□ 0.7
USP3Q9Y6I4 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms