Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HIF3AQ9Y2N7 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC16.85■□□□□ 0.29
HIF3AQ9Y2N7 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HIF3AQ9Y2N7 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
HIF3AQ9Y2N7 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC16.85■□□□□ 0.29
HIF3AQ9Y2N7 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HIF3AQ9Y2N7 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HIF3AQ9Y2N7 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC16.85■□□□□ 0.29
HIF3AQ9Y2N7 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC16.85■□□□□ 0.29
HIF3AQ9Y2N7 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC16.85■□□□□ 0.29
HIF3AQ9Y2N7 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC16.85■□□□□ 0.29
HIF3AQ9Y2N7 DGCR10-201ENST00000609839 495 ntBASIC16.85■□□□□ 0.29
HIF3AQ9Y2N7 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
HIF3AQ9Y2N7 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HIF3AQ9Y2N7 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC16.85■□□□□ 0.29
HIF3AQ9Y2N7 AC096733.2-201ENST00000609937 1394 ntBASIC16.85■□□□□ 0.29
HIF3AQ9Y2N7 KRT8P45-201ENST00000414328 1447 ntBASIC16.85■□□□□ 0.29
HIF3AQ9Y2N7 AC112777.1-201ENST00000540175 1423 ntBASIC16.85■□□□□ 0.29
HIF3AQ9Y2N7 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
HIF3AQ9Y2N7 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC16.85■□□□□ 0.29
HIF3AQ9Y2N7 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC16.85■□□□□ 0.29
HIF3AQ9Y2N7 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HIF3AQ9Y2N7 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HIF3AQ9Y2N7 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HIF3AQ9Y2N7 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC16.85■□□□□ 0.29
HIF3AQ9Y2N7 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC16.85■□□□□ 0.29
HIF3AQ9Y2N7 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
HIF3AQ9Y2N7 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC16.85■□□□□ 0.29
HIF3AQ9Y2N7 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HIF3AQ9Y2N7 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC16.84■□□□□ 0.29
HIF3AQ9Y2N7 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
HIF3AQ9Y2N7 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HIF3AQ9Y2N7 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC16.84■□□□□ 0.29
HIF3AQ9Y2N7 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC16.84■□□□□ 0.29
HIF3AQ9Y2N7 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HIF3AQ9Y2N7 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
HIF3AQ9Y2N7 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC16.84■□□□□ 0.29
HIF3AQ9Y2N7 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
HIF3AQ9Y2N7 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HIF3AQ9Y2N7 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HIF3AQ9Y2N7 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
HIF3AQ9Y2N7 AC098590.1-201ENST00000468126 897 ntBASIC16.84■□□□□ 0.29
HIF3AQ9Y2N7 AC116562.2-201ENST00000507042 360 ntBASIC16.84■□□□□ 0.29
HIF3AQ9Y2N7 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC16.84■□□□□ 0.29
HIF3AQ9Y2N7 AC142381.4-202ENST00000563973 229 ntBASIC16.84■□□□□ 0.29
HIF3AQ9Y2N7 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
HIF3AQ9Y2N7 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC16.84■□□□□ 0.29
HIF3AQ9Y2N7 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
HIF3AQ9Y2N7 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC16.84■□□□□ 0.29
HIF3AQ9Y2N7 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
HIF3AQ9Y2N7 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
HIF3AQ9Y2N7 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC16.84■□□□□ 0.29
HIF3AQ9Y2N7 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HIF3AQ9Y2N7 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HIF3AQ9Y2N7 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
HIF3AQ9Y2N7 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HIF3AQ9Y2N7 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HIF3AQ9Y2N7 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HIF3AQ9Y2N7 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HIF3AQ9Y2N7 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HIF3AQ9Y2N7 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HIF3AQ9Y2N7 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
HIF3AQ9Y2N7 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
HIF3AQ9Y2N7 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC16.83■□□□□ 0.29
HIF3AQ9Y2N7 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.29
HIF3AQ9Y2N7 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
HIF3AQ9Y2N7 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
HIF3AQ9Y2N7 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
HIF3AQ9Y2N7 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HIF3AQ9Y2N7 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HIF3AQ9Y2N7 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HIF3AQ9Y2N7 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HIF3AQ9Y2N7 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
HIF3AQ9Y2N7 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC16.83■□□□□ 0.28
HIF3AQ9Y2N7 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
HIF3AQ9Y2N7 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC16.83■□□□□ 0.28
HIF3AQ9Y2N7 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
HIF3AQ9Y2N7 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC16.83■□□□□ 0.28
HIF3AQ9Y2N7 UBE2SP1-201ENST00000450587 669 ntBASIC16.83■□□□□ 0.28
HIF3AQ9Y2N7 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HIF3AQ9Y2N7 NUDT16P1-203ENST00000513809 620 ntBASIC16.83■□□□□ 0.28
HIF3AQ9Y2N7 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC16.83■□□□□ 0.28
HIF3AQ9Y2N7 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC16.83■□□□□ 0.28
HIF3AQ9Y2N7 AL162741.1-201ENST00000565563 1558 ntBASIC16.83■□□□□ 0.28
HIF3AQ9Y2N7 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC16.83■□□□□ 0.28
HIF3AQ9Y2N7 GRAP-204ENST00000573099 846 ntTSL 3 BASIC16.83■□□□□ 0.28
HIF3AQ9Y2N7 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
HIF3AQ9Y2N7 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC16.83■□□□□ 0.28
HIF3AQ9Y2N7 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC16.83■□□□□ 0.28
HIF3AQ9Y2N7 AL109659.2-201ENST00000606809 1674 ntBASIC16.83■□□□□ 0.28
HIF3AQ9Y2N7 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC16.83■□□□□ 0.28
HIF3AQ9Y2N7 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC16.83■□□□□ 0.28
HIF3AQ9Y2N7 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
HIF3AQ9Y2N7 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HIF3AQ9Y2N7 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
HIF3AQ9Y2N7 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HIF3AQ9Y2N7 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HIF3AQ9Y2N7 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HIF3AQ9Y2N7 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HIF3AQ9Y2N7 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 58.9 ms