Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 LINC00167-201ENST00000530583 1419 ntBASIC35.38■■■■□ 3.25
SHROOM4Q9ULL8 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC35.37■■■■□ 3.25
SHROOM4Q9ULL8 AL512353.2-201ENST00000448759 1962 ntBASIC35.37■■■■□ 3.25
SHROOM4Q9ULL8 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC35.37■■■■□ 3.25
SHROOM4Q9ULL8 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC35.37■■■■□ 3.25
SHROOM4Q9ULL8 DFFB-203ENST00000341385 572 ntTSL 5 BASIC35.37■■■■□ 3.25
SHROOM4Q9ULL8 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC35.37■■■■□ 3.25
SHROOM4Q9ULL8 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC35.37■■■■□ 3.25
SHROOM4Q9ULL8 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC35.37■■■■□ 3.25
SHROOM4Q9ULL8 AC099336.1-202ENST00000602961 463 ntBASIC35.37■■■■□ 3.25
SHROOM4Q9ULL8 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC35.37■■■■□ 3.25
SHROOM4Q9ULL8 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC35.37■■■■□ 3.25
SHROOM4Q9ULL8 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC35.37■■■■□ 3.25
SHROOM4Q9ULL8 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC35.37■■■■□ 3.25
SHROOM4Q9ULL8 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC35.37■■■■□ 3.25
SHROOM4Q9ULL8 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC35.37■■■■□ 3.25
SHROOM4Q9ULL8 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC35.37■■■■□ 3.25
SHROOM4Q9ULL8 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC35.36■■■■□ 3.25
SHROOM4Q9ULL8 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC35.36■■■■□ 3.25
SHROOM4Q9ULL8 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC35.36■■■■□ 3.25
SHROOM4Q9ULL8 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC35.36■■■■□ 3.25
SHROOM4Q9ULL8 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC35.36■■■■□ 3.25
SHROOM4Q9ULL8 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC35.36■■■■□ 3.25
SHROOM4Q9ULL8 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC35.36■■■■□ 3.25
SHROOM4Q9ULL8 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC35.36■■■■□ 3.25
SHROOM4Q9ULL8 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC35.36■■■■□ 3.25
SHROOM4Q9ULL8 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC35.35■■■■□ 3.25
SHROOM4Q9ULL8 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC35.35■■■■□ 3.25
SHROOM4Q9ULL8 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC35.35■■■■□ 3.25
SHROOM4Q9ULL8 AF238378.1-201ENST00000526806 358 ntBASIC35.35■■■■□ 3.25
SHROOM4Q9ULL8 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC35.35■■■■□ 3.25
SHROOM4Q9ULL8 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC35.35■■■■□ 3.25
SHROOM4Q9ULL8 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC35.35■■■■□ 3.25
SHROOM4Q9ULL8 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC35.35■■■■□ 3.25
SHROOM4Q9ULL8 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC35.35■■■■□ 3.25
SHROOM4Q9ULL8 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC35.35■■■■□ 3.25
SHROOM4Q9ULL8 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC35.35■■■■□ 3.25
SHROOM4Q9ULL8 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC35.35■■■■□ 3.25
SHROOM4Q9ULL8 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC35.35■■■■□ 3.25
SHROOM4Q9ULL8 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC35.35■■■■□ 3.25
SHROOM4Q9ULL8 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC35.35■■■■□ 3.25
SHROOM4Q9ULL8 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC35.35■■■■□ 3.25
SHROOM4Q9ULL8 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC35.35■■■■□ 3.25
SHROOM4Q9ULL8 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC35.35■■■■□ 3.25
SHROOM4Q9ULL8 AC018712.1-201ENST00000455767 687 ntBASIC35.35■■■■□ 3.25
SHROOM4Q9ULL8 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC35.35■■■■□ 3.25
SHROOM4Q9ULL8 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC35.35■■■■□ 3.25
SHROOM4Q9ULL8 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC35.35■■■■□ 3.25
SHROOM4Q9ULL8 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC35.35■■■■□ 3.25
SHROOM4Q9ULL8 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC35.34■■■■□ 3.25
SHROOM4Q9ULL8 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC35.34■■■■□ 3.25
SHROOM4Q9ULL8 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC35.34■■■■□ 3.25
SHROOM4Q9ULL8 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC35.34■■■■□ 3.25
SHROOM4Q9ULL8 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC35.34■■■■□ 3.25
SHROOM4Q9ULL8 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC35.34■■■■□ 3.25
SHROOM4Q9ULL8 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC35.34■■■■□ 3.25
SHROOM4Q9ULL8 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC35.34■■■■□ 3.25
SHROOM4Q9ULL8 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC35.34■■■■□ 3.25
SHROOM4Q9ULL8 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC35.34■■■■□ 3.25
SHROOM4Q9ULL8 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC35.34■■■■□ 3.25
SHROOM4Q9ULL8 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC35.34■■■■□ 3.25
SHROOM4Q9ULL8 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC35.33■■■■□ 3.25
SHROOM4Q9ULL8 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC35.33■■■■□ 3.25
SHROOM4Q9ULL8 EMD-201ENST00000369835 966 ntTSL 3 BASIC35.33■■■■□ 3.25
SHROOM4Q9ULL8 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC35.33■■■■□ 3.25
SHROOM4Q9ULL8 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC35.33■■■■□ 3.25
SHROOM4Q9ULL8 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC35.33■■■■□ 3.25
SHROOM4Q9ULL8 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC35.33■■■■□ 3.25
SHROOM4Q9ULL8 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC35.33■■■■□ 3.25
SHROOM4Q9ULL8 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC35.33■■■■□ 3.25
SHROOM4Q9ULL8 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC35.33■■■■□ 3.25
SHROOM4Q9ULL8 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC35.32■■■■□ 3.25
SHROOM4Q9ULL8 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC35.32■■■■□ 3.25
SHROOM4Q9ULL8 AC243591.1-201ENST00000452967 1364 ntBASIC35.32■■■■□ 3.25
SHROOM4Q9ULL8 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC35.32■■■■□ 3.25
SHROOM4Q9ULL8 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC35.32■■■■□ 3.24
SHROOM4Q9ULL8 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC35.32■■■■□ 3.24
SHROOM4Q9ULL8 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC35.32■■■■□ 3.24
SHROOM4Q9ULL8 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC35.32■■■■□ 3.24
SHROOM4Q9ULL8 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC35.32■■■■□ 3.24
SHROOM4Q9ULL8 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC35.32■■■■□ 3.24
SHROOM4Q9ULL8 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC35.32■■■■□ 3.24
SHROOM4Q9ULL8 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC35.32■■■■□ 3.24
SHROOM4Q9ULL8 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC35.32■■■■□ 3.24
SHROOM4Q9ULL8 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC35.32■■■■□ 3.24
SHROOM4Q9ULL8 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC35.31■■■■□ 3.24
SHROOM4Q9ULL8 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC35.31■■■■□ 3.24
SHROOM4Q9ULL8 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC35.31■■■■□ 3.24
SHROOM4Q9ULL8 KATNBL1P6-202ENST00000562413 1466 ntBASIC35.31■■■■□ 3.24
SHROOM4Q9ULL8 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC35.31■■■■□ 3.24
SHROOM4Q9ULL8 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC35.31■■■■□ 3.24
SHROOM4Q9ULL8 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC35.31■■■■□ 3.24
SHROOM4Q9ULL8 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC35.31■■■■□ 3.24
SHROOM4Q9ULL8 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC35.31■■■■□ 3.24
SHROOM4Q9ULL8 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC35.31■■■■□ 3.24
SHROOM4Q9ULL8 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC35.31■■■■□ 3.24
SHROOM4Q9ULL8 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC35.31■■■■□ 3.24
SHROOM4Q9ULL8 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC35.31■■■■□ 3.24
SHROOM4Q9ULL8 Z83836.1-201ENST00000624605 1642 ntBASIC35.31■■■■□ 3.24
SHROOM4Q9ULL8 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC35.31■■■■□ 3.24
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms