Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 LINC01711-201ENST00000598340 967 ntBASIC20.85■□□□□ 0.93
VTA1Q9NP79 Z69720.1-201ENST00000601483 472 ntBASIC20.85■□□□□ 0.93
VTA1Q9NP79 AL592071.1-201ENST00000611956 408 ntBASIC20.85■□□□□ 0.93
VTA1Q9NP79 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC20.85■□□□□ 0.93
VTA1Q9NP79 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
VTA1Q9NP79 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VTA1Q9NP79 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
VTA1Q9NP79 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC20.85■□□□□ 0.93
VTA1Q9NP79 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
VTA1Q9NP79 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
VTA1Q9NP79 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC20.85■□□□□ 0.93
VTA1Q9NP79 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
VTA1Q9NP79 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
VTA1Q9NP79 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
VTA1Q9NP79 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.84■□□□□ 0.93
VTA1Q9NP79 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
VTA1Q9NP79 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
VTA1Q9NP79 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
VTA1Q9NP79 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
VTA1Q9NP79 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
VTA1Q9NP79 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VTA1Q9NP79 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
VTA1Q9NP79 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
VTA1Q9NP79 AP000593.1-201ENST00000393668 712 ntBASIC20.84■□□□□ 0.93
VTA1Q9NP79 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
VTA1Q9NP79 RN7SL606P-201ENST00000472779 293 ntBASIC20.84■□□□□ 0.93
VTA1Q9NP79 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC20.84■□□□□ 0.93
VTA1Q9NP79 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VTA1Q9NP79 AL032819.2-201ENST00000624543 2162 ntBASIC20.84■□□□□ 0.93
VTA1Q9NP79 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
VTA1Q9NP79 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VTA1Q9NP79 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VTA1Q9NP79 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
VTA1Q9NP79 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.84■□□□□ 0.93
VTA1Q9NP79 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC20.84■□□□□ 0.93
VTA1Q9NP79 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
VTA1Q9NP79 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
VTA1Q9NP79 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
VTA1Q9NP79 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
VTA1Q9NP79 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
VTA1Q9NP79 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC20.83■□□□□ 0.93
VTA1Q9NP79 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.83■□□□□ 0.93
VTA1Q9NP79 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
VTA1Q9NP79 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
VTA1Q9NP79 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
VTA1Q9NP79 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC20.83■□□□□ 0.93
VTA1Q9NP79 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
VTA1Q9NP79 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC20.83■□□□□ 0.93
VTA1Q9NP79 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC20.83■□□□□ 0.93
VTA1Q9NP79 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
VTA1Q9NP79 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC20.83■□□□□ 0.92
VTA1Q9NP79 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
VTA1Q9NP79 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
VTA1Q9NP79 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
VTA1Q9NP79 MTMR9LP-203ENST00000426597 1545 ntBASIC20.83■□□□□ 0.92
VTA1Q9NP79 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
VTA1Q9NP79 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
VTA1Q9NP79 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VTA1Q9NP79 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VTA1Q9NP79 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VTA1Q9NP79 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VTA1Q9NP79 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VTA1Q9NP79 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VTA1Q9NP79 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VTA1Q9NP79 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VTA1Q9NP79 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
VTA1Q9NP79 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC20.82■□□□□ 0.92
VTA1Q9NP79 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC20.82■□□□□ 0.92
VTA1Q9NP79 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC20.82■□□□□ 0.92
VTA1Q9NP79 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
VTA1Q9NP79 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC20.82■□□□□ 0.92
VTA1Q9NP79 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC20.82■□□□□ 0.92
VTA1Q9NP79 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC20.82■□□□□ 0.92
VTA1Q9NP79 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC20.82■□□□□ 0.92
VTA1Q9NP79 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
VTA1Q9NP79 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VTA1Q9NP79 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VTA1Q9NP79 NFYC-AS1-201ENST00000606277 1687 ntBASIC20.82■□□□□ 0.92
VTA1Q9NP79 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC20.82■□□□□ 0.92
VTA1Q9NP79 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VTA1Q9NP79 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC20.82■□□□□ 0.92
VTA1Q9NP79 AL353692.3-201ENST00000407031 1396 ntBASIC20.82■□□□□ 0.92
VTA1Q9NP79 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
VTA1Q9NP79 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VTA1Q9NP79 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
VTA1Q9NP79 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
VTA1Q9NP79 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
VTA1Q9NP79 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VTA1Q9NP79 LINC00167-201ENST00000530583 1419 ntBASIC20.81■□□□□ 0.92
VTA1Q9NP79 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VTA1Q9NP79 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
VTA1Q9NP79 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VTA1Q9NP79 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC20.81■□□□□ 0.92
VTA1Q9NP79 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VTA1Q9NP79 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC20.81■□□□□ 0.92
VTA1Q9NP79 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC20.81■□□□□ 0.92
VTA1Q9NP79 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC20.81■□□□□ 0.92
VTA1Q9NP79 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC20.81■□□□□ 0.92
VTA1Q9NP79 AC124864.1-201ENST00000623408 392 ntBASIC20.81■□□□□ 0.92
VTA1Q9NP79 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms