Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
MMP28Q9H239 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC16.46■□□□□ 0.23
MMP28Q9H239 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC16.46■□□□□ 0.23
MMP28Q9H239 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
MMP28Q9H239 MIPEPP3-201ENST00000412105 444 ntBASIC16.46■□□□□ 0.23
MMP28Q9H239 SERPINH1P1-201ENST00000419794 1249 ntBASIC16.46■□□□□ 0.23
MMP28Q9H239 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC16.46■□□□□ 0.23
MMP28Q9H239 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC16.46■□□□□ 0.23
MMP28Q9H239 KLF13-207ENST00000560473 489 ntTSL 3 BASIC16.46■□□□□ 0.23
MMP28Q9H239 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
MMP28Q9H239 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
MMP28Q9H239 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
MMP28Q9H239 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
MMP28Q9H239 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
MMP28Q9H239 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
MMP28Q9H239 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC16.46■□□□□ 0.23
MMP28Q9H239 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
MMP28Q9H239 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC16.46■□□□□ 0.23
MMP28Q9H239 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC16.46■□□□□ 0.23
MMP28Q9H239 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC16.46■□□□□ 0.23
MMP28Q9H239 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
MMP28Q9H239 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC16.46■□□□□ 0.22
MMP28Q9H239 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC16.46■□□□□ 0.22
MMP28Q9H239 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
MMP28Q9H239 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
MMP28Q9H239 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.22
MMP28Q9H239 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC16.46■□□□□ 0.22
MMP28Q9H239 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.46■□□□□ 0.22
MMP28Q9H239 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
MMP28Q9H239 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
MMP28Q9H239 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
MMP28Q9H239 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
MMP28Q9H239 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
MMP28Q9H239 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
MMP28Q9H239 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
MMP28Q9H239 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC16.45■□□□□ 0.22
MMP28Q9H239 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MMP28Q9H239 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
MMP28Q9H239 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MMP28Q9H239 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MMP28Q9H239 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC16.45■□□□□ 0.22
MMP28Q9H239 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC16.45■□□□□ 0.22
MMP28Q9H239 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC16.45■□□□□ 0.22
MMP28Q9H239 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC16.45■□□□□ 0.22
MMP28Q9H239 BRWD1-AS2-201ENST00000603064 1028 ntBASIC16.45■□□□□ 0.22
MMP28Q9H239 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MMP28Q9H239 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC16.45■□□□□ 0.22
MMP28Q9H239 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC16.45■□□□□ 0.22
MMP28Q9H239 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MMP28Q9H239 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC16.45■□□□□ 0.22
MMP28Q9H239 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
MMP28Q9H239 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
MMP28Q9H239 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MMP28Q9H239 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MMP28Q9H239 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MMP28Q9H239 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.45■□□□□ 0.22
MMP28Q9H239 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MMP28Q9H239 PTBP1P-201ENST00000554374 1601 ntBASIC16.45■□□□□ 0.22
MMP28Q9H239 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC16.45■□□□□ 0.22
MMP28Q9H239 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
MMP28Q9H239 NXN-202ENST00000537628 1340 ntTSL 3 BASIC16.45■□□□□ 0.22
MMP28Q9H239 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MMP28Q9H239 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MMP28Q9H239 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
MMP28Q9H239 AD000864.1-201ENST00000624076 2295 ntBASIC16.44■□□□□ 0.22
MMP28Q9H239 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
MMP28Q9H239 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
MMP28Q9H239 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC16.44■□□□□ 0.22
MMP28Q9H239 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MMP28Q9H239 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
MMP28Q9H239 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC16.44■□□□□ 0.22
MMP28Q9H239 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.44■□□□□ 0.22
MMP28Q9H239 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
MMP28Q9H239 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC16.44■□□□□ 0.22
MMP28Q9H239 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MMP28Q9H239 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MMP28Q9H239 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
MMP28Q9H239 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC16.44■□□□□ 0.22
MMP28Q9H239 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
MMP28Q9H239 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
MMP28Q9H239 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
MMP28Q9H239 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC16.44■□□□□ 0.22
MMP28Q9H239 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC16.44■□□□□ 0.22
MMP28Q9H239 C2orf69P4-201ENST00000565394 541 ntBASIC16.44■□□□□ 0.22
MMP28Q9H239 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
MMP28Q9H239 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
MMP28Q9H239 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
MMP28Q9H239 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC16.44■□□□□ 0.22
MMP28Q9H239 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.44■□□□□ 0.22
MMP28Q9H239 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
MMP28Q9H239 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.44■□□□□ 0.22
MMP28Q9H239 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
MMP28Q9H239 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MMP28Q9H239 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MMP28Q9H239 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC16.43■□□□□ 0.22
MMP28Q9H239 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC16.43■□□□□ 0.22
MMP28Q9H239 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
MMP28Q9H239 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
MMP28Q9H239 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
MMP28Q9H239 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms