Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC28BQ9BUN5 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC18.15■□□□□ 0.5
CCDC28BQ9BUN5 AC097658.1-201ENST00000475555 843 ntBASIC18.15■□□□□ 0.5
CCDC28BQ9BUN5 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC28BQ9BUN5 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC18.15■□□□□ 0.5
CCDC28BQ9BUN5 RARRES2P6-201ENST00000567333 442 ntBASIC18.15■□□□□ 0.5
CCDC28BQ9BUN5 C1QL1P1-201ENST00000568105 661 ntBASIC18.15■□□□□ 0.5
CCDC28BQ9BUN5 ANKRD20A6P-201ENST00000618763 204 ntBASIC18.15■□□□□ 0.5
CCDC28BQ9BUN5 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC18.15■□□□□ 0.5
CCDC28BQ9BUN5 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC28BQ9BUN5 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC28BQ9BUN5 AC093677.2-201ENST00000600169 1863 ntBASIC18.15■□□□□ 0.5
CCDC28BQ9BUN5 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC28BQ9BUN5 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC28BQ9BUN5 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
CCDC28BQ9BUN5 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC28BQ9BUN5 KRT8P45-201ENST00000414328 1447 ntBASIC18.15■□□□□ 0.5
CCDC28BQ9BUN5 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
CCDC28BQ9BUN5 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
CCDC28BQ9BUN5 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
CCDC28BQ9BUN5 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC18.14■□□□□ 0.5
CCDC28BQ9BUN5 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC18.14■□□□□ 0.5
CCDC28BQ9BUN5 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
CCDC28BQ9BUN5 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC18.14■□□□□ 0.5
CCDC28BQ9BUN5 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC18.14■□□□□ 0.5
CCDC28BQ9BUN5 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
CCDC28BQ9BUN5 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC18.14■□□□□ 0.49
CCDC28BQ9BUN5 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC28BQ9BUN5 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
CCDC28BQ9BUN5 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.14■□□□□ 0.49
CCDC28BQ9BUN5 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC28BQ9BUN5 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC28BQ9BUN5 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC28BQ9BUN5 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC18.14■□□□□ 0.49
CCDC28BQ9BUN5 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC18.14■□□□□ 0.49
CCDC28BQ9BUN5 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC28BQ9BUN5 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.14■□□□□ 0.49
CCDC28BQ9BUN5 AC083906.2-201ENST00000511578 360 ntBASIC18.14■□□□□ 0.49
CCDC28BQ9BUN5 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.14■□□□□ 0.49
CCDC28BQ9BUN5 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC28BQ9BUN5 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC18.14■□□□□ 0.49
CCDC28BQ9BUN5 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC28BQ9BUN5 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC28BQ9BUN5 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC28BQ9BUN5 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC28BQ9BUN5 AL139384.1-201ENST00000612143 3047 ntBASIC18.14■□□□□ 0.49
CCDC28BQ9BUN5 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
CCDC28BQ9BUN5 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC28BQ9BUN5 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC28BQ9BUN5 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC28BQ9BUN5 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC28BQ9BUN5 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC28BQ9BUN5 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC18.14■□□□□ 0.49
CCDC28BQ9BUN5 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC18.14■□□□□ 0.49
CCDC28BQ9BUN5 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 LINC00896-202ENST00000609602 2128 ntBASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 PPP1R14BP2-201ENST00000426284 444 ntBASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 CROCCP5-201ENST00000436658 830 ntBASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 AC138028.4-201ENST00000564984 1845 ntBASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 AC134043.2-201ENST00000624206 2238 ntBASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC18.13■□□□□ 0.49
CCDC28BQ9BUN5 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.12■□□□□ 0.49
CCDC28BQ9BUN5 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 62.3 ms