Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 AL031598.1-201ENST00000561511 1773 ntBASIC19.12■□□□□ 0.65
SKA1Q96BD8 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SKA1Q96BD8 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SKA1Q96BD8 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SKA1Q96BD8 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC19.12■□□□□ 0.65
SKA1Q96BD8 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
SKA1Q96BD8 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SKA1Q96BD8 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SKA1Q96BD8 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
SKA1Q96BD8 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
SKA1Q96BD8 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SKA1Q96BD8 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SKA1Q96BD8 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SKA1Q96BD8 INGX-201ENST00000359239 846 ntBASIC19.12■□□□□ 0.65
SKA1Q96BD8 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC19.12■□□□□ 0.65
SKA1Q96BD8 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
SKA1Q96BD8 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SKA1Q96BD8 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SKA1Q96BD8 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
SKA1Q96BD8 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SKA1Q96BD8 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC19.12■□□□□ 0.65
SKA1Q96BD8 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
SKA1Q96BD8 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SKA1Q96BD8 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SKA1Q96BD8 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
SKA1Q96BD8 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC19.12■□□□□ 0.65
SKA1Q96BD8 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SKA1Q96BD8 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC19.12■□□□□ 0.65
SKA1Q96BD8 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SKA1Q96BD8 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SKA1Q96BD8 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SKA1Q96BD8 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
SKA1Q96BD8 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SKA1Q96BD8 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SKA1Q96BD8 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SKA1Q96BD8 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
SKA1Q96BD8 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
SKA1Q96BD8 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SKA1Q96BD8 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC19.11■□□□□ 0.65
SKA1Q96BD8 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
SKA1Q96BD8 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SKA1Q96BD8 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
SKA1Q96BD8 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
SKA1Q96BD8 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC19.11■□□□□ 0.65
SKA1Q96BD8 AC117947.1-201ENST00000427448 529 ntBASIC19.11■□□□□ 0.65
SKA1Q96BD8 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC19.11■□□□□ 0.65
SKA1Q96BD8 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC19.11■□□□□ 0.65
SKA1Q96BD8 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC19.11■□□□□ 0.65
SKA1Q96BD8 AL353719.1-201ENST00000566847 864 ntBASIC19.11■□□□□ 0.65
SKA1Q96BD8 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC19.11■□□□□ 0.65
SKA1Q96BD8 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SKA1Q96BD8 AL138966.2-201ENST00000621997 464 ntBASIC19.11■□□□□ 0.65
SKA1Q96BD8 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SKA1Q96BD8 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC19.11■□□□□ 0.65
SKA1Q96BD8 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SKA1Q96BD8 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC19.11■□□□□ 0.65
SKA1Q96BD8 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
SKA1Q96BD8 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC19.11■□□□□ 0.65
SKA1Q96BD8 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC19.11■□□□□ 0.65
SKA1Q96BD8 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SKA1Q96BD8 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SKA1Q96BD8 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SKA1Q96BD8 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC19.1■□□□□ 0.65
SKA1Q96BD8 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC19.1■□□□□ 0.65
SKA1Q96BD8 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
SKA1Q96BD8 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC19.1■□□□□ 0.65
SKA1Q96BD8 AC092338.2-201ENST00000568827 1415 ntBASIC19.1■□□□□ 0.65
SKA1Q96BD8 BICD1-207ENST00000551848 1962 ntBASIC19.1■□□□□ 0.65
SKA1Q96BD8 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SKA1Q96BD8 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SKA1Q96BD8 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SKA1Q96BD8 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC19.1■□□□□ 0.65
SKA1Q96BD8 FAM8A6P-201ENST00000407496 1135 ntBASIC19.1■□□□□ 0.65
SKA1Q96BD8 TSPY5P-201ENST00000426936 936 ntBASIC19.1■□□□□ 0.65
SKA1Q96BD8 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC19.1■□□□□ 0.65
SKA1Q96BD8 AC139887.4-201ENST00000607877 719 ntBASIC19.1■□□□□ 0.65
SKA1Q96BD8 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC19.1■□□□□ 0.65
SKA1Q96BD8 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SKA1Q96BD8 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC19.09■□□□□ 0.65
SKA1Q96BD8 AL354751.1-201ENST00000412768 1863 ntBASIC19.09■□□□□ 0.65
SKA1Q96BD8 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SKA1Q96BD8 AC141586.3-201ENST00000562166 1838 ntBASIC19.09■□□□□ 0.65
SKA1Q96BD8 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
SKA1Q96BD8 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SKA1Q96BD8 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC19.09■□□□□ 0.65
SKA1Q96BD8 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SKA1Q96BD8 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC19.09■□□□□ 0.65
SKA1Q96BD8 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC19.09■□□□□ 0.65
SKA1Q96BD8 TEX21P-204ENST00000641479 1693 ntBASIC19.09■□□□□ 0.65
SKA1Q96BD8 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SKA1Q96BD8 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
SKA1Q96BD8 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SKA1Q96BD8 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SKA1Q96BD8 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC19.09■□□□□ 0.65
SKA1Q96BD8 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SKA1Q96BD8 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC19.09■□□□□ 0.65
SKA1Q96BD8 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC19.09■□□□□ 0.65
SKA1Q96BD8 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC19.09■□□□□ 0.65
SKA1Q96BD8 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
SKA1Q96BD8 AC140113.3-201ENST00000605663 199 ntBASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms