Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 RNA5SP421-201ENST00000516864 134 ntBASIC18.88■□□□□ 0.61
TTC28Q96AY4 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC18.88■□□□□ 0.61
TTC28Q96AY4 AC104390.1-201ENST00000555663 520 ntBASIC18.88■□□□□ 0.61
TTC28Q96AY4 PDPK2P-202ENST00000562415 1191 ntBASIC18.88■□□□□ 0.61
TTC28Q96AY4 YTHDF3-AS1-201ENST00000603538 718 ntBASIC18.88■□□□□ 0.61
TTC28Q96AY4 MIR6799-201ENST00000620297 69 ntBASIC18.88■□□□□ 0.61
TTC28Q96AY4 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TTC28Q96AY4 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TTC28Q96AY4 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TTC28Q96AY4 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TTC28Q96AY4 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.87■□□□□ 0.61
TTC28Q96AY4 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TTC28Q96AY4 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
TTC28Q96AY4 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC18.87■□□□□ 0.61
TTC28Q96AY4 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TTC28Q96AY4 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC18.87■□□□□ 0.61
TTC28Q96AY4 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TTC28Q96AY4 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.87■□□□□ 0.61
TTC28Q96AY4 AC064836.3-201ENST00000607928 673 ntBASIC18.87■□□□□ 0.61
TTC28Q96AY4 AC073592.5-201ENST00000624854 528 ntBASIC18.87■□□□□ 0.61
TTC28Q96AY4 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TTC28Q96AY4 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TTC28Q96AY4 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
TTC28Q96AY4 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC18.87■□□□□ 0.61
TTC28Q96AY4 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
TTC28Q96AY4 ARSEP1-201ENST00000420443 635 ntBASIC18.86■□□□□ 0.61
TTC28Q96AY4 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC18.86■□□□□ 0.61
TTC28Q96AY4 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC18.86■□□□□ 0.61
TTC28Q96AY4 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
TTC28Q96AY4 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC18.86■□□□□ 0.61
TTC28Q96AY4 METTL23-205ENST00000588302 925 ntTSL 5 BASIC18.86■□□□□ 0.61
TTC28Q96AY4 MOK-225ENST00000522867 1883 ntTSL 5 BASIC18.86■□□□□ 0.61
TTC28Q96AY4 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TTC28Q96AY4 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TTC28Q96AY4 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TTC28Q96AY4 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TTC28Q96AY4 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TTC28Q96AY4 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TTC28Q96AY4 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
TTC28Q96AY4 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC18.86■□□□□ 0.61
TTC28Q96AY4 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TTC28Q96AY4 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC18.86■□□□□ 0.61
TTC28Q96AY4 AL031432.2-201ENST00000566714 459 ntBASIC18.86■□□□□ 0.61
TTC28Q96AY4 AL928711.1-201ENST00000570165 459 ntBASIC18.86■□□□□ 0.61
TTC28Q96AY4 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
TTC28Q96AY4 CASK-201ENST00000378154 2494 ntTSL 5 BASIC18.86■□□□□ 0.61
TTC28Q96AY4 AL109659.2-201ENST00000606809 1674 ntBASIC18.86■□□□□ 0.61
TTC28Q96AY4 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
TTC28Q96AY4 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
TTC28Q96AY4 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
TTC28Q96AY4 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TTC28Q96AY4 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
TTC28Q96AY4 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC18.85■□□□□ 0.61
TTC28Q96AY4 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC18.85■□□□□ 0.61
TTC28Q96AY4 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC18.85■□□□□ 0.61
TTC28Q96AY4 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
TTC28Q96AY4 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
TTC28Q96AY4 HLA-DRB6-201ENST00000411500 1235 ntBASIC18.85■□□□□ 0.61
TTC28Q96AY4 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC18.85■□□□□ 0.61
TTC28Q96AY4 AP000344.2-201ENST00000512987 629 ntBASIC18.85■□□□□ 0.61
TTC28Q96AY4 MIR3180-4-201ENST00000582223 153 ntBASIC18.85■□□□□ 0.61
TTC28Q96AY4 NKAPP1-205ENST00000585790 367 ntBASIC18.85■□□□□ 0.61
TTC28Q96AY4 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
TTC28Q96AY4 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC18.85■□□□□ 0.61
TTC28Q96AY4 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
TTC28Q96AY4 ME2-208ENST00000638937 2471 ntTSL 5 BASIC18.85■□□□□ 0.61
TTC28Q96AY4 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC18.85■□□□□ 0.61
TTC28Q96AY4 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
TTC28Q96AY4 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
TTC28Q96AY4 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
TTC28Q96AY4 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TTC28Q96AY4 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.85■□□□□ 0.61
TTC28Q96AY4 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TTC28Q96AY4 TFAMP1-201ENST00000412727 736 ntBASIC18.85■□□□□ 0.61
TTC28Q96AY4 AC055876.3-201ENST00000431496 288 ntBASIC18.85■□□□□ 0.61
TTC28Q96AY4 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC18.85■□□□□ 0.61
TTC28Q96AY4 CRB3P1-201ENST00000449338 276 ntBASIC18.85■□□□□ 0.61
TTC28Q96AY4 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC18.85■□□□□ 0.61
TTC28Q96AY4 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
TTC28Q96AY4 CYGB-205ENST00000590175 830 ntTSL 3 BASIC18.85■□□□□ 0.61
TTC28Q96AY4 AC138649.4-201ENST00000612222 287 ntBASIC18.85■□□□□ 0.61
TTC28Q96AY4 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TTC28Q96AY4 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TTC28Q96AY4 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
TTC28Q96AY4 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
TTC28Q96AY4 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
TTC28Q96AY4 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
TTC28Q96AY4 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC18.84■□□□□ 0.61
TTC28Q96AY4 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC18.84■□□□□ 0.61
TTC28Q96AY4 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
TTC28Q96AY4 TERF1P3-201ENST00000505638 1227 ntBASIC18.84■□□□□ 0.61
TTC28Q96AY4 PUS1-205ENST00000535067 838 ntTSL 3 BASIC18.84■□□□□ 0.61
TTC28Q96AY4 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC18.84■□□□□ 0.61
TTC28Q96AY4 TCAP-202ENST00000578283 583 ntTSL 5 BASIC18.84■□□□□ 0.61
TTC28Q96AY4 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC18.84■□□□□ 0.61
TTC28Q96AY4 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
TTC28Q96AY4 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
TTC28Q96AY4 ANKRD20A8P-203ENST00000641373 517 ntBASIC18.84■□□□□ 0.61
TTC28Q96AY4 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TTC28Q96AY4 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms