Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC24.57■■□□□ 1.52
USHBP1Q8N6Y0 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC24.57■■□□□ 1.52
USHBP1Q8N6Y0 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
USHBP1Q8N6Y0 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
USHBP1Q8N6Y0 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC24.57■■□□□ 1.52
USHBP1Q8N6Y0 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC24.57■■□□□ 1.52
USHBP1Q8N6Y0 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
USHBP1Q8N6Y0 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
USHBP1Q8N6Y0 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC24.57■■□□□ 1.52
USHBP1Q8N6Y0 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC24.56■■□□□ 1.52
USHBP1Q8N6Y0 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
USHBP1Q8N6Y0 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC24.56■■□□□ 1.52
USHBP1Q8N6Y0 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
USHBP1Q8N6Y0 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
USHBP1Q8N6Y0 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
USHBP1Q8N6Y0 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
USHBP1Q8N6Y0 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
USHBP1Q8N6Y0 GXYLT1P4-201ENST00000613576 1192 ntBASIC24.56■■□□□ 1.52
USHBP1Q8N6Y0 AC124864.1-201ENST00000623408 392 ntBASIC24.56■■□□□ 1.52
USHBP1Q8N6Y0 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC24.56■■□□□ 1.52
USHBP1Q8N6Y0 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC24.56■■□□□ 1.52
USHBP1Q8N6Y0 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
USHBP1Q8N6Y0 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
USHBP1Q8N6Y0 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
USHBP1Q8N6Y0 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC24.55■■□□□ 1.52
USHBP1Q8N6Y0 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC24.55■■□□□ 1.52
USHBP1Q8N6Y0 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
USHBP1Q8N6Y0 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC24.55■■□□□ 1.52
USHBP1Q8N6Y0 KRT8P50-201ENST00000562022 1438 ntBASIC24.55■■□□□ 1.52
USHBP1Q8N6Y0 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
USHBP1Q8N6Y0 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC24.55■■□□□ 1.52
USHBP1Q8N6Y0 KRT16P4-201ENST00000453883 522 ntBASIC24.55■■□□□ 1.52
USHBP1Q8N6Y0 BET1L-206ENST00000486280 665 ntTSL 3 BASIC24.55■■□□□ 1.52
USHBP1Q8N6Y0 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC24.55■■□□□ 1.52
USHBP1Q8N6Y0 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC24.55■■□□□ 1.52
USHBP1Q8N6Y0 AC024563.2-201ENST00000603282 481 ntBASIC24.55■■□□□ 1.52
USHBP1Q8N6Y0 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC24.55■■□□□ 1.52
USHBP1Q8N6Y0 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC24.55■■□□□ 1.52
USHBP1Q8N6Y0 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC24.55■■□□□ 1.52
USHBP1Q8N6Y0 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
USHBP1Q8N6Y0 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC24.55■■□□□ 1.52
USHBP1Q8N6Y0 AC093484.2-201ENST00000580996 2166 ntBASIC24.54■■□□□ 1.52
USHBP1Q8N6Y0 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC24.54■■□□□ 1.52
USHBP1Q8N6Y0 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
USHBP1Q8N6Y0 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC24.54■■□□□ 1.52
USHBP1Q8N6Y0 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
USHBP1Q8N6Y0 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
USHBP1Q8N6Y0 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC24.54■■□□□ 1.52
USHBP1Q8N6Y0 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC24.54■■□□□ 1.52
USHBP1Q8N6Y0 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
USHBP1Q8N6Y0 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC24.54■■□□□ 1.52
USHBP1Q8N6Y0 REEP1-209ENST00000541910 969 ntTSL 2 BASIC24.54■■□□□ 1.52
USHBP1Q8N6Y0 AL160237.2-201ENST00000556165 472 ntBASIC24.54■■□□□ 1.52
USHBP1Q8N6Y0 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC24.54■■□□□ 1.52
USHBP1Q8N6Y0 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
USHBP1Q8N6Y0 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
USHBP1Q8N6Y0 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
USHBP1Q8N6Y0 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
USHBP1Q8N6Y0 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
USHBP1Q8N6Y0 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC24.54■■□□□ 1.52
USHBP1Q8N6Y0 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
USHBP1Q8N6Y0 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC24.53■■□□□ 1.52
USHBP1Q8N6Y0 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC24.53■■□□□ 1.52
USHBP1Q8N6Y0 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
USHBP1Q8N6Y0 MTMR9LP-203ENST00000426597 1545 ntBASIC24.53■■□□□ 1.52
USHBP1Q8N6Y0 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
USHBP1Q8N6Y0 IGHV3-47-201ENST00000425060 335 ntBASIC24.53■■□□□ 1.52
USHBP1Q8N6Y0 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC24.53■■□□□ 1.52
USHBP1Q8N6Y0 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC24.53■■□□□ 1.52
USHBP1Q8N6Y0 RN7SL606P-201ENST00000472779 293 ntBASIC24.53■■□□□ 1.52
USHBP1Q8N6Y0 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC24.53■■□□□ 1.52
USHBP1Q8N6Y0 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC24.53■■□□□ 1.52
USHBP1Q8N6Y0 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC24.53■■□□□ 1.52
USHBP1Q8N6Y0 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
USHBP1Q8N6Y0 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC24.53■■□□□ 1.52
USHBP1Q8N6Y0 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC24.53■■□□□ 1.52
USHBP1Q8N6Y0 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC24.53■■□□□ 1.52
USHBP1Q8N6Y0 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
USHBP1Q8N6Y0 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
USHBP1Q8N6Y0 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC24.52■■□□□ 1.52
USHBP1Q8N6Y0 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC24.52■■□□□ 1.52
USHBP1Q8N6Y0 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
USHBP1Q8N6Y0 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC24.52■■□□□ 1.52
USHBP1Q8N6Y0 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC24.52■■□□□ 1.52
USHBP1Q8N6Y0 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC24.52■■□□□ 1.52
USHBP1Q8N6Y0 AKR1C7P-201ENST00000305623 895 ntBASIC24.52■■□□□ 1.52
USHBP1Q8N6Y0 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
USHBP1Q8N6Y0 MRPL3P1-201ENST00000400109 1033 ntBASIC24.52■■□□□ 1.52
USHBP1Q8N6Y0 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC24.52■■□□□ 1.52
USHBP1Q8N6Y0 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC24.52■■□□□ 1.52
USHBP1Q8N6Y0 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC24.52■■□□□ 1.52
USHBP1Q8N6Y0 AP002469.2-201ENST00000531724 424 ntBASIC24.52■■□□□ 1.52
USHBP1Q8N6Y0 BMF-207ENST00000559701 630 ntTSL 3 BASIC24.52■■□□□ 1.52
USHBP1Q8N6Y0 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC24.52■■□□□ 1.52
USHBP1Q8N6Y0 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC24.52■■□□□ 1.52
USHBP1Q8N6Y0 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC24.52■■□□□ 1.52
USHBP1Q8N6Y0 MIR3180-4-201ENST00000582223 153 ntBASIC24.52■■□□□ 1.52
USHBP1Q8N6Y0 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
USHBP1Q8N6Y0 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC24.52■■□□□ 1.52
USHBP1Q8N6Y0 NFYC-AS1-201ENST00000606277 1687 ntBASIC24.52■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 62.9 ms