Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC65Q8IXS2 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC20.69■□□□□ 0.9
CCDC65Q8IXS2 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC65Q8IXS2 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC65Q8IXS2 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC65Q8IXS2 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
CCDC65Q8IXS2 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC65Q8IXS2 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC65Q8IXS2 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC65Q8IXS2 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC65Q8IXS2 AC007663.1-201ENST00000438948 1240 ntBASIC20.69■□□□□ 0.9
CCDC65Q8IXS2 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC20.69■□□□□ 0.9
CCDC65Q8IXS2 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC65Q8IXS2 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
CCDC65Q8IXS2 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC65Q8IXS2 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC65Q8IXS2 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC65Q8IXS2 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC65Q8IXS2 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC65Q8IXS2 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
CCDC65Q8IXS2 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC65Q8IXS2 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC65Q8IXS2 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC65Q8IXS2 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC65Q8IXS2 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC20.68■□□□□ 0.9
CCDC65Q8IXS2 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
CCDC65Q8IXS2 AC126763.1-201ENST00000552015 2118 ntBASIC20.68■□□□□ 0.9
CCDC65Q8IXS2 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
CCDC65Q8IXS2 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC65Q8IXS2 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC65Q8IXS2 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC20.68■□□□□ 0.9
CCDC65Q8IXS2 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC65Q8IXS2 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC65Q8IXS2 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
CCDC65Q8IXS2 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC65Q8IXS2 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC65Q8IXS2 AC128688.1-201ENST00000487626 519 ntBASIC20.68■□□□□ 0.9
CCDC65Q8IXS2 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC20.68■□□□□ 0.9
CCDC65Q8IXS2 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC65Q8IXS2 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC65Q8IXS2 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC65Q8IXS2 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
CCDC65Q8IXS2 AC010947.1-201ENST00000623454 693 ntBASIC20.68■□□□□ 0.9
CCDC65Q8IXS2 AC010653.2-201ENST00000623505 997 ntBASIC20.68■□□□□ 0.9
CCDC65Q8IXS2 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC65Q8IXS2 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC65Q8IXS2 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC65Q8IXS2 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC65Q8IXS2 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC65Q8IXS2 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC65Q8IXS2 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC65Q8IXS2 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC65Q8IXS2 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC65Q8IXS2 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC65Q8IXS2 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC65Q8IXS2 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC65Q8IXS2 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC20.67■□□□□ 0.9
CCDC65Q8IXS2 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC20.67■□□□□ 0.9
CCDC65Q8IXS2 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC65Q8IXS2 AC073592.3-201ENST00000625118 1834 ntBASIC20.67■□□□□ 0.9
CCDC65Q8IXS2 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC65Q8IXS2 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
CCDC65Q8IXS2 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC65Q8IXS2 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC65Q8IXS2 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
CCDC65Q8IXS2 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC65Q8IXS2 ELP6-205ENST00000439305 880 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC65Q8IXS2 KRT18P41-201ENST00000518924 1277 ntBASIC20.67■□□□□ 0.9
CCDC65Q8IXS2 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
CCDC65Q8IXS2 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC65Q8IXS2 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC20.67■□□□□ 0.9
CCDC65Q8IXS2 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC65Q8IXS2 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC65Q8IXS2 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC65Q8IXS2 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC65Q8IXS2 AC034236.2-201ENST00000606662 1610 ntBASIC20.67■□□□□ 0.9
CCDC65Q8IXS2 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC65Q8IXS2 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC65Q8IXS2 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC65Q8IXS2 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC65Q8IXS2 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC65Q8IXS2 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC20.66■□□□□ 0.9
CCDC65Q8IXS2 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC65Q8IXS2 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC65Q8IXS2 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
CCDC65Q8IXS2 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
CCDC65Q8IXS2 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC65Q8IXS2 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC65Q8IXS2 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC65Q8IXS2 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC65Q8IXS2 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC20.66■□□□□ 0.9
CCDC65Q8IXS2 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC65Q8IXS2 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC65Q8IXS2 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC65Q8IXS2 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC20.66■□□□□ 0.9
CCDC65Q8IXS2 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC65Q8IXS2 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC65Q8IXS2 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
CCDC65Q8IXS2 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC65Q8IXS2 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms