Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 OR2A1-AS1-207ENST00000486094 819 ntBASIC17.36■□□□□ 0.37
RFX4Q33E94 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC17.36■□□□□ 0.37
RFX4Q33E94 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC17.36■□□□□ 0.37
RFX4Q33E94 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RFX4Q33E94 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.36■□□□□ 0.37
RFX4Q33E94 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
RFX4Q33E94 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
RFX4Q33E94 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RFX4Q33E94 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RFX4Q33E94 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
RFX4Q33E94 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.36■□□□□ 0.37
RFX4Q33E94 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
RFX4Q33E94 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.36■□□□□ 0.37
RFX4Q33E94 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RFX4Q33E94 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RFX4Q33E94 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
RFX4Q33E94 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RFX4Q33E94 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.35■□□□□ 0.37
RFX4Q33E94 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RFX4Q33E94 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.35■□□□□ 0.37
RFX4Q33E94 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC17.35■□□□□ 0.37
RFX4Q33E94 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
RFX4Q33E94 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RFX4Q33E94 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RFX4Q33E94 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RFX4Q33E94 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
RFX4Q33E94 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
RFX4Q33E94 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC17.35■□□□□ 0.37
RFX4Q33E94 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
RFX4Q33E94 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
RFX4Q33E94 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC17.35■□□□□ 0.37
RFX4Q33E94 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC17.35■□□□□ 0.37
RFX4Q33E94 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC17.35■□□□□ 0.37
RFX4Q33E94 MYC-208ENST00000641036 567 ntBASIC17.35■□□□□ 0.37
RFX4Q33E94 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
RFX4Q33E94 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RFX4Q33E94 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.35■□□□□ 0.37
RFX4Q33E94 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC17.35■□□□□ 0.37
RFX4Q33E94 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RFX4Q33E94 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RFX4Q33E94 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RFX4Q33E94 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
RFX4Q33E94 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.35■□□□□ 0.37
RFX4Q33E94 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.35■□□□□ 0.37
RFX4Q33E94 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
RFX4Q33E94 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
RFX4Q33E94 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
RFX4Q33E94 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.35■□□□□ 0.37
RFX4Q33E94 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RFX4Q33E94 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RFX4Q33E94 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
RFX4Q33E94 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RFX4Q33E94 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RFX4Q33E94 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
RFX4Q33E94 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
RFX4Q33E94 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RFX4Q33E94 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
RFX4Q33E94 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RFX4Q33E94 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RFX4Q33E94 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RFX4Q33E94 TREX2-204ENST00000370212 861 ntTSL 5 BASIC17.34■□□□□ 0.37
RFX4Q33E94 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
RFX4Q33E94 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.34■□□□□ 0.37
RFX4Q33E94 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
RFX4Q33E94 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.34■□□□□ 0.37
RFX4Q33E94 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
RFX4Q33E94 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
RFX4Q33E94 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
RFX4Q33E94 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC17.34■□□□□ 0.37
RFX4Q33E94 MAP2K4P1-201ENST00000438453 1195 ntBASIC17.34■□□□□ 0.37
RFX4Q33E94 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC17.34■□□□□ 0.37
RFX4Q33E94 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.34■□□□□ 0.37
RFX4Q33E94 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC17.34■□□□□ 0.37
RFX4Q33E94 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC17.34■□□□□ 0.37
RFX4Q33E94 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC17.34■□□□□ 0.37
RFX4Q33E94 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC17.34■□□□□ 0.37
RFX4Q33E94 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
RFX4Q33E94 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
RFX4Q33E94 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC17.34■□□□□ 0.37
RFX4Q33E94 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
RFX4Q33E94 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC17.34■□□□□ 0.37
RFX4Q33E94 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
RFX4Q33E94 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC17.34■□□□□ 0.37
RFX4Q33E94 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC17.34■□□□□ 0.37
RFX4Q33E94 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC17.34■□□□□ 0.37
RFX4Q33E94 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
RFX4Q33E94 HEIH-201ENST00000623091 1652 ntBASIC17.34■□□□□ 0.37
RFX4Q33E94 AC139713.2-201ENST00000641328 2723 ntBASIC17.34■□□□□ 0.37
RFX4Q33E94 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.34■□□□□ 0.37
RFX4Q33E94 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
RFX4Q33E94 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RFX4Q33E94 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
RFX4Q33E94 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
RFX4Q33E94 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC17.33■□□□□ 0.37
RFX4Q33E94 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.33■□□□□ 0.37
RFX4Q33E94 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
RFX4Q33E94 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.37
RFX4Q33E94 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RFX4Q33E94 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RFX4Q33E94 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms