Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC17.26■□□□□ 0.35
RNF4P78317 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
RNF4P78317 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC17.26■□□□□ 0.35
RNF4P78317 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
RNF4P78317 HOXB1-202ENST00000577092 1414 ntBASIC17.26■□□□□ 0.35
RNF4P78317 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC17.26■□□□□ 0.35
RNF4P78317 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC17.26■□□□□ 0.35
RNF4P78317 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
RNF4P78317 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.26■□□□□ 0.35
RNF4P78317 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RNF4P78317 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RNF4P78317 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.26■□□□□ 0.35
RNF4P78317 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.26■□□□□ 0.35
RNF4P78317 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RNF4P78317 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC17.26■□□□□ 0.35
RNF4P78317 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RNF4P78317 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNF4P78317 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
RNF4P78317 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNF4P78317 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RNF4P78317 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RNF4P78317 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC17.25■□□□□ 0.35
RNF4P78317 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNF4P78317 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNF4P78317 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RNF4P78317 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNF4P78317 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNF4P78317 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
RNF4P78317 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNF4P78317 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17.25■□□□□ 0.35
RNF4P78317 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNF4P78317 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC17.25■□□□□ 0.35
RNF4P78317 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNF4P78317 FAM8A6P-201ENST00000407496 1135 ntBASIC17.25■□□□□ 0.35
RNF4P78317 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNF4P78317 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC17.25■□□□□ 0.35
RNF4P78317 HOMER2P1-201ENST00000455653 964 ntBASIC17.25■□□□□ 0.35
RNF4P78317 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.25■□□□□ 0.35
RNF4P78317 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
RNF4P78317 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC17.25■□□□□ 0.35
RNF4P78317 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC17.25■□□□□ 0.35
RNF4P78317 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC17.25■□□□□ 0.35
RNF4P78317 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RNF4P78317 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC17.25■□□□□ 0.35
RNF4P78317 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNF4P78317 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNF4P78317 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
RNF4P78317 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
RNF4P78317 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNF4P78317 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC17.24■□□□□ 0.35
RNF4P78317 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
RNF4P78317 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC17.24■□□□□ 0.35
RNF4P78317 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF4P78317 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.24■□□□□ 0.35
RNF4P78317 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC17.24■□□□□ 0.35
RNF4P78317 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC17.24■□□□□ 0.35
RNF4P78317 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF4P78317 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF4P78317 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF4P78317 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF4P78317 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF4P78317 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF4P78317 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
RNF4P78317 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC17.24■□□□□ 0.35
RNF4P78317 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC17.24■□□□□ 0.35
RNF4P78317 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF4P78317 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC17.24■□□□□ 0.35
RNF4P78317 SEC1P-202ENST00000473944 940 ntBASIC17.24■□□□□ 0.35
RNF4P78317 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RNF4P78317 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC17.24■□□□□ 0.35
RNF4P78317 CD81-212ENST00000526072 1172 ntTSL 5 BASIC17.24■□□□□ 0.35
RNF4P78317 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC17.24■□□□□ 0.35
RNF4P78317 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RNF4P78317 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
RNF4P78317 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
RNF4P78317 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF4P78317 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC17.24■□□□□ 0.35
RNF4P78317 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
RNF4P78317 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF4P78317 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RNF4P78317 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
RNF4P78317 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF4P78317 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC17.24■□□□□ 0.35
RNF4P78317 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF4P78317 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC17.24■□□□□ 0.35
RNF4P78317 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.24■□□□□ 0.35
RNF4P78317 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF4P78317 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF4P78317 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
RNF4P78317 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RNF4P78317 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RNF4P78317 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
RNF4P78317 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RNF4P78317 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.23■□□□□ 0.35
RNF4P78317 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RNF4P78317 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RNF4P78317 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
RNF4P78317 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RNF4P78317 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RNF4P78317 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms