Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
BDNFP23560 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
BDNFP23560 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
BDNFP23560 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
BDNFP23560 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
BDNFP23560 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC19.65■□□□□ 0.74
BDNFP23560 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
BDNFP23560 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
BDNFP23560 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC19.65■□□□□ 0.74
BDNFP23560 ZNF444P1-201ENST00000559497 298 ntBASIC19.65■□□□□ 0.74
BDNFP23560 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
BDNFP23560 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
BDNFP23560 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
BDNFP23560 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC19.65■□□□□ 0.74
BDNFP23560 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
BDNFP23560 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
BDNFP23560 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
BDNFP23560 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
BDNFP23560 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
BDNFP23560 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC19.64■□□□□ 0.74
BDNFP23560 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
BDNFP23560 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.74
BDNFP23560 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
BDNFP23560 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
BDNFP23560 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
BDNFP23560 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
BDNFP23560 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
BDNFP23560 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
BDNFP23560 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
BDNFP23560 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
BDNFP23560 HBZP1-201ENST00000354915 429 ntBASIC19.64■□□□□ 0.73
BDNFP23560 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC19.64■□□□□ 0.73
BDNFP23560 PCED1CP-201ENST00000419887 785 ntBASIC19.64■□□□□ 0.73
BDNFP23560 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
BDNFP23560 DAP-202ENST00000432074 1048 ntTSL 2 BASIC19.64■□□□□ 0.73
BDNFP23560 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC19.64■□□□□ 0.73
BDNFP23560 AC010240.3-201ENST00000607688 395 ntBASIC19.64■□□□□ 0.73
BDNFP23560 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
BDNFP23560 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
BDNFP23560 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
BDNFP23560 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
BDNFP23560 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
BDNFP23560 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
BDNFP23560 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC19.64■□□□□ 0.73
BDNFP23560 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC19.64■□□□□ 0.73
BDNFP23560 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
BDNFP23560 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
BDNFP23560 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
BDNFP23560 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
BDNFP23560 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC19.63■□□□□ 0.73
BDNFP23560 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
BDNFP23560 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
BDNFP23560 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
BDNFP23560 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC19.63■□□□□ 0.73
BDNFP23560 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC19.63■□□□□ 0.73
BDNFP23560 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC19.63■□□□□ 0.73
BDNFP23560 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
BDNFP23560 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC19.63■□□□□ 0.73
BDNFP23560 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
BDNFP23560 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
BDNFP23560 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
BDNFP23560 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
BDNFP23560 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
BDNFP23560 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC19.63■□□□□ 0.73
BDNFP23560 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC19.63■□□□□ 0.73
BDNFP23560 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC19.63■□□□□ 0.73
BDNFP23560 NAT14-202ENST00000587400 416 ntTSL 5 BASIC19.63■□□□□ 0.73
BDNFP23560 AC091076.1-201ENST00000610741 619 ntBASIC19.63■□□□□ 0.73
BDNFP23560 AC079602.3-201ENST00000623931 403 ntBASIC19.63■□□□□ 0.73
BDNFP23560 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC19.63■□□□□ 0.73
BDNFP23560 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
BDNFP23560 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19.63■□□□□ 0.73
BDNFP23560 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
BDNFP23560 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC19.62■□□□□ 0.73
BDNFP23560 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
BDNFP23560 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
BDNFP23560 CYP51A1P1-201ENST00000492267 1507 ntBASIC19.62■□□□□ 0.73
BDNFP23560 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC19.62■□□□□ 0.73
BDNFP23560 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
BDNFP23560 AC005332.1-201ENST00000577698 1310 ntBASIC19.62■□□□□ 0.73
BDNFP23560 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
BDNFP23560 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC19.62■□□□□ 0.73
BDNFP23560 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
BDNFP23560 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
BDNFP23560 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
BDNFP23560 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
BDNFP23560 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
BDNFP23560 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC19.62■□□□□ 0.73
BDNFP23560 SPDYE13P-201ENST00000445314 798 ntBASIC19.62■□□□□ 0.73
BDNFP23560 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
BDNFP23560 VENTXP5-201ENST00000523979 775 ntBASIC19.62■□□□□ 0.73
BDNFP23560 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC19.62■□□□□ 0.73
BDNFP23560 DBP-204ENST00000599385 709 ntTSL 3 BASIC19.62■□□□□ 0.73
BDNFP23560 SNAI3-AS1-205ENST00000568633 2096 ntBASIC19.62■□□□□ 0.73
BDNFP23560 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
BDNFP23560 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.62■□□□□ 0.73
BDNFP23560 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
BDNFP23560 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
BDNFP23560 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
BDNFP23560 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms