Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
USF1P22415 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
USF1P22415 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
USF1P22415 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC15.79■□□□□ 0.12
USF1P22415 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
USF1P22415 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC15.79■□□□□ 0.12
USF1P22415 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
USF1P22415 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
USF1P22415 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
USF1P22415 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
USF1P22415 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
USF1P22415 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
USF1P22415 TSPY21P-201ENST00000433481 731 ntBASIC15.79■□□□□ 0.12
USF1P22415 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC15.79■□□□□ 0.12
USF1P22415 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC15.79■□□□□ 0.12
USF1P22415 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC15.79■□□□□ 0.12
USF1P22415 MIR4674-201ENST00000582457 87 ntBASIC15.79■□□□□ 0.12
USF1P22415 WDR88-203ENST00000592765 651 ntTSL 5 BASIC15.79■□□□□ 0.12
USF1P22415 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC15.79■□□□□ 0.12
USF1P22415 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC15.79■□□□□ 0.12
USF1P22415 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
USF1P22415 AC104417.2-201ENST00000562989 1793 ntBASIC15.79■□□□□ 0.12
USF1P22415 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
USF1P22415 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
USF1P22415 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
USF1P22415 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
USF1P22415 TBC1D3P2-202ENST00000577902 1649 ntBASIC15.79■□□□□ 0.12
USF1P22415 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC15.79■□□□□ 0.12
USF1P22415 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC15.79■□□□□ 0.12
USF1P22415 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
USF1P22415 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC15.79■□□□□ 0.12
USF1P22415 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC15.79■□□□□ 0.12
USF1P22415 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
USF1P22415 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
USF1P22415 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
USF1P22415 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
USF1P22415 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
USF1P22415 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC15.78■□□□□ 0.12
USF1P22415 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
USF1P22415 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC15.78■□□□□ 0.12
USF1P22415 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
USF1P22415 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
USF1P22415 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
USF1P22415 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
USF1P22415 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
USF1P22415 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
USF1P22415 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
USF1P22415 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
USF1P22415 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
USF1P22415 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
USF1P22415 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
USF1P22415 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
USF1P22415 SPDYE15P-201ENST00000424157 909 ntBASIC15.78■□□□□ 0.12
USF1P22415 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC15.78■□□□□ 0.12
USF1P22415 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC15.78■□□□□ 0.12
USF1P22415 AL691432.3-201ENST00000621860 400 ntBASIC15.78■□□□□ 0.12
USF1P22415 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
USF1P22415 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
USF1P22415 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
USF1P22415 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
USF1P22415 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC15.78■□□□□ 0.12
USF1P22415 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
USF1P22415 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC15.78■□□□□ 0.12
USF1P22415 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
USF1P22415 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
USF1P22415 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC15.78■□□□□ 0.12
USF1P22415 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
USF1P22415 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
USF1P22415 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
USF1P22415 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC15.78■□□□□ 0.12
USF1P22415 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
USF1P22415 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
USF1P22415 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
USF1P22415 BX323043.1-201ENST00000641006 1765 ntBASIC15.77■□□□□ 0.12
USF1P22415 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
USF1P22415 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
USF1P22415 ZNF815P-204ENST00000434898 1737 ntBASIC15.77■□□□□ 0.12
USF1P22415 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC15.77■□□□□ 0.12
USF1P22415 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
USF1P22415 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
USF1P22415 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
USF1P22415 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC15.77■□□□□ 0.12
USF1P22415 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
USF1P22415 ILF2-202ENST00000368681 726 ntTSL 2 BASIC15.77■□□□□ 0.12
USF1P22415 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
USF1P22415 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC15.77■□□□□ 0.12
USF1P22415 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC15.77■□□□□ 0.12
USF1P22415 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC15.77■□□□□ 0.11
USF1P22415 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC15.77■□□□□ 0.11
USF1P22415 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
USF1P22415 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC15.77■□□□□ 0.11
USF1P22415 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
USF1P22415 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
USF1P22415 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
USF1P22415 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
USF1P22415 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.11
USF1P22415 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
USF1P22415 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC15.77■□□□□ 0.11
USF1P22415 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
USF1P22415 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms