Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.2■□□□□ 0.5
TNFP01375 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
TNFP01375 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.2■□□□□ 0.5
TNFP01375 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.2■□□□□ 0.5
TNFP01375 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TNFP01375 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TNFP01375 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TNFP01375 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TNFP01375 ATP5G2P1-201ENST00000433580 426 ntBASIC18.2■□□□□ 0.5
TNFP01375 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC18.2■□□□□ 0.5
TNFP01375 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TNFP01375 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC18.2■□□□□ 0.5
TNFP01375 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC18.2■□□□□ 0.5
TNFP01375 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC18.2■□□□□ 0.5
TNFP01375 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TNFP01375 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TNFP01375 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.2■□□□□ 0.5
TNFP01375 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC18.2■□□□□ 0.5
TNFP01375 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.2■□□□□ 0.5
TNFP01375 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
TNFP01375 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TNFP01375 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TNFP01375 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TNFP01375 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TNFP01375 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC18.2■□□□□ 0.5
TNFP01375 AL161938.1-201ENST00000569833 2180 ntBASIC18.2■□□□□ 0.5
TNFP01375 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.2■□□□□ 0.5
TNFP01375 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TNFP01375 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TNFP01375 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
TNFP01375 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TNFP01375 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.19■□□□□ 0.5
TNFP01375 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
TNFP01375 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TNFP01375 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
TNFP01375 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TNFP01375 PVRIG2P-201ENST00000435460 978 ntBASIC18.19■□□□□ 0.5
TNFP01375 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC18.19■□□□□ 0.5
TNFP01375 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC18.19■□□□□ 0.5
TNFP01375 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC18.19■□□□□ 0.5
TNFP01375 AC005332.7-201ENST00000614046 2005 ntBASIC18.19■□□□□ 0.5
TNFP01375 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC18.19■□□□□ 0.5
TNFP01375 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
TNFP01375 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC18.19■□□□□ 0.5
TNFP01375 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TNFP01375 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC18.19■□□□□ 0.5
TNFP01375 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TNFP01375 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.19■□□□□ 0.5
TNFP01375 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TNFP01375 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TNFP01375 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.18■□□□□ 0.5
TNFP01375 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TNFP01375 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TNFP01375 AC093525.10-201ENST00000625130 1569 ntBASIC18.18■□□□□ 0.5
TNFP01375 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC18.18■□□□□ 0.5
TNFP01375 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TNFP01375 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC18.18■□□□□ 0.5
TNFP01375 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TNFP01375 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
TNFP01375 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TNFP01375 TSSC2-201ENST00000450217 709 ntBASIC18.18■□□□□ 0.5
TNFP01375 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TNFP01375 KRT8P26-201ENST00000534154 1276 ntBASIC18.18■□□□□ 0.5
TNFP01375 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC18.18■□□□□ 0.5
TNFP01375 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TNFP01375 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC18.18■□□□□ 0.5
TNFP01375 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TNFP01375 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC18.18■□□□□ 0.5
TNFP01375 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TNFP01375 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.18■□□□□ 0.5
TNFP01375 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TNFP01375 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TNFP01375 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
TNFP01375 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
TNFP01375 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
TNFP01375 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TNFP01375 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TNFP01375 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC18.18■□□□□ 0.5
TNFP01375 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC18.17■□□□□ 0.5
TNFP01375 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TNFP01375 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TNFP01375 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
TNFP01375 IPPK-202ENST00000375522 882 ntTSL 3 BASIC18.17■□□□□ 0.5
TNFP01375 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC18.17■□□□□ 0.5
TNFP01375 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
TNFP01375 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC18.17■□□□□ 0.5
TNFP01375 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC18.17■□□□□ 0.5
TNFP01375 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TNFP01375 PBK-203ENST00000522944 1499 ntTSL 2 BASIC18.17■□□□□ 0.5
TNFP01375 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.17■□□□□ 0.5
TNFP01375 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TNFP01375 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TNFP01375 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TNFP01375 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TNFP01375 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TNFP01375 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.17■□□□□ 0.5
TNFP01375 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TNFP01375 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TNFP01375 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
TNFP01375 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms