Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SEMA3DO95025 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SEMA3DO95025 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.87■□□□□ 0.45
SEMA3DO95025 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.87■□□□□ 0.45
SEMA3DO95025 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SEMA3DO95025 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
SEMA3DO95025 TBC1D3P2-202ENST00000577902 1649 ntBASIC17.87■□□□□ 0.45
SEMA3DO95025 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
SEMA3DO95025 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC17.86■□□□□ 0.45
SEMA3DO95025 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
SEMA3DO95025 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC17.86■□□□□ 0.45
SEMA3DO95025 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SEMA3DO95025 ENSA-205ENST00000361532 792 ntTSL 2 BASIC17.86■□□□□ 0.45
SEMA3DO95025 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SEMA3DO95025 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SEMA3DO95025 SNORA78-201ENST00000459373 127 ntBASIC17.86■□□□□ 0.45
SEMA3DO95025 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC17.86■□□□□ 0.45
SEMA3DO95025 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SEMA3DO95025 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC17.86■□□□□ 0.45
SEMA3DO95025 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SEMA3DO95025 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
SEMA3DO95025 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.86■□□□□ 0.45
SEMA3DO95025 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SEMA3DO95025 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SEMA3DO95025 AL357033.4-201ENST00000617703 1807 ntBASIC17.86■□□□□ 0.45
SEMA3DO95025 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SEMA3DO95025 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
SEMA3DO95025 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SEMA3DO95025 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SEMA3DO95025 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SEMA3DO95025 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
SEMA3DO95025 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SEMA3DO95025 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.86■□□□□ 0.45
SEMA3DO95025 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SEMA3DO95025 AC007613.1-201ENST00000572811 2597 ntBASIC17.86■□□□□ 0.45
SEMA3DO95025 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SEMA3DO95025 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
SEMA3DO95025 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SEMA3DO95025 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SEMA3DO95025 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SEMA3DO95025 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SEMA3DO95025 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SEMA3DO95025 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.85■□□□□ 0.45
SEMA3DO95025 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SEMA3DO95025 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SEMA3DO95025 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SEMA3DO95025 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SEMA3DO95025 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SEMA3DO95025 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SEMA3DO95025 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.85■□□□□ 0.45
SEMA3DO95025 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC17.85■□□□□ 0.45
SEMA3DO95025 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SEMA3DO95025 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
SEMA3DO95025 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
SEMA3DO95025 AL023284.2-201ENST00000405850 579 ntBASIC17.85■□□□□ 0.45
SEMA3DO95025 KRT8P45-201ENST00000414328 1447 ntBASIC17.85■□□□□ 0.45
SEMA3DO95025 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
SEMA3DO95025 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC17.85■□□□□ 0.45
SEMA3DO95025 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.85■□□□□ 0.45
SEMA3DO95025 SLC25A1P2-201ENST00000430693 912 ntBASIC17.85■□□□□ 0.45
SEMA3DO95025 MCCD1P1-208ENST00000445732 328 ntBASIC17.85■□□□□ 0.45
SEMA3DO95025 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC17.85■□□□□ 0.45
SEMA3DO95025 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
SEMA3DO95025 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
SEMA3DO95025 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SEMA3DO95025 FITM1-202ENST00000559294 800 ntBASIC17.85■□□□□ 0.45
SEMA3DO95025 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC17.85■□□□□ 0.45
SEMA3DO95025 SNX21-213ENST00000614929 587 ntTSL 5 BASIC17.85■□□□□ 0.45
SEMA3DO95025 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC17.85■□□□□ 0.45
SEMA3DO95025 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SEMA3DO95025 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.85■□□□□ 0.45
SEMA3DO95025 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SEMA3DO95025 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SEMA3DO95025 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.84■□□□□ 0.45
SEMA3DO95025 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC17.84■□□□□ 0.45
SEMA3DO95025 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SEMA3DO95025 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SEMA3DO95025 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SEMA3DO95025 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SEMA3DO95025 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
SEMA3DO95025 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SEMA3DO95025 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
SEMA3DO95025 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SEMA3DO95025 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
SEMA3DO95025 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
SEMA3DO95025 AC112777.1-201ENST00000540175 1423 ntBASIC17.84■□□□□ 0.45
SEMA3DO95025 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC17.84■□□□□ 0.45
SEMA3DO95025 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SEMA3DO95025 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SEMA3DO95025 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
SEMA3DO95025 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SEMA3DO95025 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC17.84■□□□□ 0.45
SEMA3DO95025 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC17.84■□□□□ 0.45
SEMA3DO95025 KRT18P41-201ENST00000518924 1277 ntBASIC17.84■□□□□ 0.45
SEMA3DO95025 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SEMA3DO95025 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
SEMA3DO95025 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
SEMA3DO95025 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SEMA3DO95025 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
SEMA3DO95025 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms