Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC15.02■□□□□ -0
HMGB3O15347 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC15.02■□□□□ -0
HMGB3O15347 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
HMGB3O15347 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
HMGB3O15347 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
HMGB3O15347 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
HMGB3O15347 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
HMGB3O15347 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC15.02■□□□□ -0
HMGB3O15347 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
HMGB3O15347 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
HMGB3O15347 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
HMGB3O15347 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC15.02■□□□□ -0
HMGB3O15347 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC15.02■□□□□ -0
HMGB3O15347 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
HMGB3O15347 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
HMGB3O15347 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
HMGB3O15347 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
HMGB3O15347 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
HMGB3O15347 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC15.02■□□□□ -0
HMGB3O15347 PARP1-202ENST00000366792 553 ntTSL 3 BASIC15.02■□□□□ -0
HMGB3O15347 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC15.02■□□□□ -0
HMGB3O15347 AC105020.6-201ENST00000621523 1217 ntBASIC15.02■□□□□ -0
HMGB3O15347 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
HMGB3O15347 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC15.02□□□□□ -0.01
HMGB3O15347 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
HMGB3O15347 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC15.02□□□□□ -0.01
HMGB3O15347 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC15.02□□□□□ -0.01
HMGB3O15347 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC15.02□□□□□ -0.01
HMGB3O15347 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
HMGB3O15347 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
HMGB3O15347 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HMGB3O15347 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC15.01□□□□□ -0.01
HMGB3O15347 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
HMGB3O15347 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
HMGB3O15347 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
HMGB3O15347 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC15.01□□□□□ -0.01
HMGB3O15347 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HMGB3O15347 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC15.01□□□□□ -0.01
HMGB3O15347 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
HMGB3O15347 MCRIP2P1-201ENST00000394346 511 ntBASIC15.01□□□□□ -0.01
HMGB3O15347 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC15.01□□□□□ -0.01
HMGB3O15347 TERF1P5-201ENST00000477545 1207 ntBASIC15.01□□□□□ -0.01
HMGB3O15347 PBX1-209ENST00000485769 834 ntTSL 2 BASIC15.01□□□□□ -0.01
HMGB3O15347 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
HMGB3O15347 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HMGB3O15347 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC15.01□□□□□ -0.01
HMGB3O15347 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC15.01□□□□□ -0.01
HMGB3O15347 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC15.01□□□□□ -0.01
HMGB3O15347 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
HMGB3O15347 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC15.01□□□□□ -0.01
HMGB3O15347 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HMGB3O15347 FLNC-202ENST00000346177 9042 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HMGB3O15347 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
HMGB3O15347 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
HMGB3O15347 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
HMGB3O15347 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC15.01□□□□□ -0.01
HMGB3O15347 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
HMGB3O15347 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HMGB3O15347 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HMGB3O15347 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
HMGB3O15347 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
HMGB3O15347 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC15.01□□□□□ -0.01
HMGB3O15347 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC15.01□□□□□ -0.01
HMGB3O15347 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC15□□□□□ -0.01
HMGB3O15347 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC15□□□□□ -0.01
HMGB3O15347 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
HMGB3O15347 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB3O15347 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB3O15347 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB3O15347 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC15□□□□□ -0.01
HMGB3O15347 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB3O15347 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB3O15347 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
HMGB3O15347 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC15□□□□□ -0.01
HMGB3O15347 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC15□□□□□ -0.01
HMGB3O15347 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB3O15347 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB3O15347 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
HMGB3O15347 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC15□□□□□ -0.01
HMGB3O15347 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB3O15347 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB3O15347 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
HMGB3O15347 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC15□□□□□ -0.01
HMGB3O15347 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
HMGB3O15347 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC15□□□□□ -0.01
HMGB3O15347 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC15□□□□□ -0.01
HMGB3O15347 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC15□□□□□ -0.01
HMGB3O15347 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC15□□□□□ -0.01
HMGB3O15347 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC15□□□□□ -0.01
HMGB3O15347 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC15□□□□□ -0.01
HMGB3O15347 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC15□□□□□ -0.01
HMGB3O15347 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC15□□□□□ -0.01
HMGB3O15347 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB3O15347 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB3O15347 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB3O15347 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB3O15347 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
HMGB3O15347 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB3O15347 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC15□□□□□ -0.01
HMGB3O15347 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC15□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms