Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
USP3Q9Y6I4 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC19.53■□□□□ 0.72
USP3Q9Y6I4 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC19.52■□□□□ 0.72
USP3Q9Y6I4 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
USP3Q9Y6I4 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
USP3Q9Y6I4 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
USP3Q9Y6I4 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
USP3Q9Y6I4 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC19.52■□□□□ 0.72
USP3Q9Y6I4 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
USP3Q9Y6I4 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
USP3Q9Y6I4 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
USP3Q9Y6I4 SPDYE15P-201ENST00000424157 909 ntBASIC19.52■□□□□ 0.72
USP3Q9Y6I4 AC092647.4-201ENST00000457211 535 ntBASIC19.52■□□□□ 0.72
USP3Q9Y6I4 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
USP3Q9Y6I4 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC19.52■□□□□ 0.72
USP3Q9Y6I4 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC19.52■□□□□ 0.72
USP3Q9Y6I4 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC19.52■□□□□ 0.72
USP3Q9Y6I4 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC19.52■□□□□ 0.72
USP3Q9Y6I4 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
USP3Q9Y6I4 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
USP3Q9Y6I4 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.71
USP3Q9Y6I4 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
USP3Q9Y6I4 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC19.52■□□□□ 0.71
USP3Q9Y6I4 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
USP3Q9Y6I4 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
USP3Q9Y6I4 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
USP3Q9Y6I4 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC19.52■□□□□ 0.71
USP3Q9Y6I4 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
USP3Q9Y6I4 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP3Q9Y6I4 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP3Q9Y6I4 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
USP3Q9Y6I4 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
USP3Q9Y6I4 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
USP3Q9Y6I4 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC19.51■□□□□ 0.71
USP3Q9Y6I4 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
USP3Q9Y6I4 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP3Q9Y6I4 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
USP3Q9Y6I4 HYMAI.1-201ENST00000620949 238 ntBASIC19.51■□□□□ 0.71
USP3Q9Y6I4 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
USP3Q9Y6I4 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP3Q9Y6I4 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
USP3Q9Y6I4 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC19.51■□□□□ 0.71
USP3Q9Y6I4 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP3Q9Y6I4 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP3Q9Y6I4 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP3Q9Y6I4 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
USP3Q9Y6I4 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
USP3Q9Y6I4 COBL-210ENST00000632460 1941 ntTSL 5 BASIC19.51■□□□□ 0.71
USP3Q9Y6I4 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC19.51■□□□□ 0.71
USP3Q9Y6I4 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
USP3Q9Y6I4 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC19.51■□□□□ 0.71
USP3Q9Y6I4 CYP51A1P1-201ENST00000492267 1507 ntBASIC19.51■□□□□ 0.71
USP3Q9Y6I4 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.5■□□□□ 0.71
USP3Q9Y6I4 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
USP3Q9Y6I4 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USP3Q9Y6I4 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
USP3Q9Y6I4 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC19.5■□□□□ 0.71
USP3Q9Y6I4 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC19.5■□□□□ 0.71
USP3Q9Y6I4 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USP3Q9Y6I4 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC19.5■□□□□ 0.71
USP3Q9Y6I4 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
USP3Q9Y6I4 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC19.5■□□□□ 0.71
USP3Q9Y6I4 RASA4DP-201ENST00000460726 1199 ntBASIC19.5■□□□□ 0.71
USP3Q9Y6I4 AL359075.1-203ENST00000462729 1002 ntBASIC19.5■□□□□ 0.71
USP3Q9Y6I4 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC19.5■□□□□ 0.71
USP3Q9Y6I4 MIR3917-201ENST00000580971 93 ntBASIC19.5■□□□□ 0.71
USP3Q9Y6I4 MIR3180-4-201ENST00000582223 153 ntBASIC19.5■□□□□ 0.71
USP3Q9Y6I4 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC19.5■□□□□ 0.71
USP3Q9Y6I4 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
USP3Q9Y6I4 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC19.5■□□□□ 0.71
USP3Q9Y6I4 DFFB-212ENST00000625756 649 ntTSL 5 BASIC19.5■□□□□ 0.71
USP3Q9Y6I4 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC19.5■□□□□ 0.71
USP3Q9Y6I4 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
USP3Q9Y6I4 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USP3Q9Y6I4 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC19.5■□□□□ 0.71
USP3Q9Y6I4 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USP3Q9Y6I4 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
USP3Q9Y6I4 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USP3Q9Y6I4 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC19.49■□□□□ 0.71
USP3Q9Y6I4 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP3Q9Y6I4 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC19.49■□□□□ 0.71
USP3Q9Y6I4 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP3Q9Y6I4 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP3Q9Y6I4 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP3Q9Y6I4 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
USP3Q9Y6I4 AL031133.1-201ENST00000406807 723 ntBASIC19.49■□□□□ 0.71
USP3Q9Y6I4 AC034232.1-201ENST00000506026 1064 ntBASIC19.49■□□□□ 0.71
USP3Q9Y6I4 NAT14-202ENST00000587400 416 ntTSL 5 BASIC19.49■□□□□ 0.71
USP3Q9Y6I4 AC010240.3-201ENST00000607688 395 ntBASIC19.49■□□□□ 0.71
USP3Q9Y6I4 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
USP3Q9Y6I4 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP3Q9Y6I4 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
USP3Q9Y6I4 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP3Q9Y6I4 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP3Q9Y6I4 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
USP3Q9Y6I4 KRT8P50-201ENST00000562022 1438 ntBASIC19.49■□□□□ 0.71
USP3Q9Y6I4 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP3Q9Y6I4 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC19.49■□□□□ 0.71
USP3Q9Y6I4 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.49■□□□□ 0.71
USP3Q9Y6I4 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms