Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
VSX1Q9NZR4 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VSX1Q9NZR4 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
VSX1Q9NZR4 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VSX1Q9NZR4 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VSX1Q9NZR4 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VSX1Q9NZR4 SRI-203ENST00000419179 1307 ntTSL 2 BASIC16.7■□□□□ 0.26
VSX1Q9NZR4 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC16.7■□□□□ 0.26
VSX1Q9NZR4 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
VSX1Q9NZR4 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
VSX1Q9NZR4 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VSX1Q9NZR4 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VSX1Q9NZR4 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VSX1Q9NZR4 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
VSX1Q9NZR4 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
VSX1Q9NZR4 AC126763.1-201ENST00000552015 2118 ntBASIC16.69■□□□□ 0.26
VSX1Q9NZR4 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VSX1Q9NZR4 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC16.69■□□□□ 0.26
VSX1Q9NZR4 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC16.69■□□□□ 0.26
VSX1Q9NZR4 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VSX1Q9NZR4 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VSX1Q9NZR4 PRORSD1P-201ENST00000295112 541 ntBASIC16.69■□□□□ 0.26
VSX1Q9NZR4 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VSX1Q9NZR4 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC16.69■□□□□ 0.26
VSX1Q9NZR4 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VSX1Q9NZR4 FAM197Y1-201ENST00000421178 764 ntBASIC16.69■□□□□ 0.26
VSX1Q9NZR4 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC16.69■□□□□ 0.26
VSX1Q9NZR4 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC16.69■□□□□ 0.26
VSX1Q9NZR4 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC16.69■□□□□ 0.26
VSX1Q9NZR4 MYC-208ENST00000641036 567 ntBASIC16.69■□□□□ 0.26
VSX1Q9NZR4 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VSX1Q9NZR4 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC16.69■□□□□ 0.26
VSX1Q9NZR4 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC16.69■□□□□ 0.26
VSX1Q9NZR4 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VSX1Q9NZR4 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VSX1Q9NZR4 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC16.69■□□□□ 0.26
VSX1Q9NZR4 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VSX1Q9NZR4 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VSX1Q9NZR4 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VSX1Q9NZR4 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC16.69■□□□□ 0.26
VSX1Q9NZR4 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
VSX1Q9NZR4 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
VSX1Q9NZR4 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VSX1Q9NZR4 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC16.68■□□□□ 0.26
VSX1Q9NZR4 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC16.68■□□□□ 0.26
VSX1Q9NZR4 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC16.68■□□□□ 0.26
VSX1Q9NZR4 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
VSX1Q9NZR4 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VSX1Q9NZR4 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
VSX1Q9NZR4 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
VSX1Q9NZR4 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VSX1Q9NZR4 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC16.68■□□□□ 0.26
VSX1Q9NZR4 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VSX1Q9NZR4 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC16.68■□□□□ 0.26
VSX1Q9NZR4 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
VSX1Q9NZR4 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VSX1Q9NZR4 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VSX1Q9NZR4 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VSX1Q9NZR4 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
VSX1Q9NZR4 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
VSX1Q9NZR4 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC16.68■□□□□ 0.26
VSX1Q9NZR4 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC16.68■□□□□ 0.26
VSX1Q9NZR4 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC16.68■□□□□ 0.26
VSX1Q9NZR4 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC16.68■□□□□ 0.26
VSX1Q9NZR4 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC16.68■□□□□ 0.26
VSX1Q9NZR4 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC16.68■□□□□ 0.26
VSX1Q9NZR4 CD177P1-201ENST00000606252 935 ntBASIC16.68■□□□□ 0.26
VSX1Q9NZR4 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VSX1Q9NZR4 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC16.68■□□□□ 0.26
VSX1Q9NZR4 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC16.68■□□□□ 0.26
VSX1Q9NZR4 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
VSX1Q9NZR4 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VSX1Q9NZR4 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VSX1Q9NZR4 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VSX1Q9NZR4 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC16.68■□□□□ 0.26
VSX1Q9NZR4 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VSX1Q9NZR4 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
VSX1Q9NZR4 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VSX1Q9NZR4 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VSX1Q9NZR4 AL357033.4-201ENST00000617703 1807 ntBASIC16.68■□□□□ 0.26
VSX1Q9NZR4 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC16.68■□□□□ 0.26
VSX1Q9NZR4 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
VSX1Q9NZR4 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VSX1Q9NZR4 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VSX1Q9NZR4 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VSX1Q9NZR4 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC16.67■□□□□ 0.26
VSX1Q9NZR4 RCC2P3-201ENST00000418112 1537 ntBASIC16.67■□□□□ 0.26
VSX1Q9NZR4 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC16.67■□□□□ 0.26
VSX1Q9NZR4 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VSX1Q9NZR4 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
VSX1Q9NZR4 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
VSX1Q9NZR4 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VSX1Q9NZR4 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VSX1Q9NZR4 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC16.67■□□□□ 0.26
VSX1Q9NZR4 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
VSX1Q9NZR4 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VSX1Q9NZR4 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC16.67■□□□□ 0.26
VSX1Q9NZR4 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC16.67■□□□□ 0.26
VSX1Q9NZR4 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC16.67■□□□□ 0.26
VSX1Q9NZR4 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 109.7 ms