Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.51■□□□□ 0.55
TRIM39Q9HCM9 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM39Q9HCM9 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.51■□□□□ 0.55
TRIM39Q9HCM9 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM39Q9HCM9 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM39Q9HCM9 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM39Q9HCM9 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM39Q9HCM9 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM39Q9HCM9 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC18.51■□□□□ 0.55
TRIM39Q9HCM9 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM39Q9HCM9 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.51■□□□□ 0.55
TRIM39Q9HCM9 Telomerase-vert.1-201ENST00000363312 438 ntBASIC18.51■□□□□ 0.55
TRIM39Q9HCM9 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM39Q9HCM9 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
TRIM39Q9HCM9 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC18.51■□□□□ 0.55
TRIM39Q9HCM9 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM39Q9HCM9 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM39Q9HCM9 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC18.51■□□□□ 0.55
TRIM39Q9HCM9 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
TRIM39Q9HCM9 AC140113.3-201ENST00000605663 199 ntBASIC18.51■□□□□ 0.55
TRIM39Q9HCM9 AC139887.4-201ENST00000607877 719 ntBASIC18.51■□□□□ 0.55
TRIM39Q9HCM9 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM39Q9HCM9 AC006011.2-201ENST00000621313 1158 ntBASIC18.51■□□□□ 0.55
TRIM39Q9HCM9 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM39Q9HCM9 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM39Q9HCM9 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM39Q9HCM9 AC098818.2-201ENST00000564925 2320 ntBASIC18.51■□□□□ 0.55
TRIM39Q9HCM9 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM39Q9HCM9 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM39Q9HCM9 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM39Q9HCM9 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
TRIM39Q9HCM9 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM39Q9HCM9 HEIH-201ENST00000623091 1652 ntBASIC18.5■□□□□ 0.55
TRIM39Q9HCM9 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM39Q9HCM9 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC18.5■□□□□ 0.55
TRIM39Q9HCM9 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.5■□□□□ 0.55
TRIM39Q9HCM9 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM39Q9HCM9 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.5■□□□□ 0.55
TRIM39Q9HCM9 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
TRIM39Q9HCM9 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM39Q9HCM9 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM39Q9HCM9 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
TRIM39Q9HCM9 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM39Q9HCM9 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.5■□□□□ 0.55
TRIM39Q9HCM9 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM39Q9HCM9 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM39Q9HCM9 MIR564-202ENST00000385049 94 ntBASIC18.5■□□□□ 0.55
TRIM39Q9HCM9 AC117947.1-201ENST00000427448 529 ntBASIC18.5■□□□□ 0.55
TRIM39Q9HCM9 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC18.5■□□□□ 0.55
TRIM39Q9HCM9 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC18.5■□□□□ 0.55
TRIM39Q9HCM9 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC18.5■□□□□ 0.55
TRIM39Q9HCM9 AC083906.6-201ENST00000641366 219 ntBASIC18.5■□□□□ 0.55
TRIM39Q9HCM9 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC18.5■□□□□ 0.55
TRIM39Q9HCM9 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM39Q9HCM9 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM39Q9HCM9 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
TRIM39Q9HCM9 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.5■□□□□ 0.55
TRIM39Q9HCM9 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM39Q9HCM9 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM39Q9HCM9 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM39Q9HCM9 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM39Q9HCM9 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM39Q9HCM9 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM39Q9HCM9 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM39Q9HCM9 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
TRIM39Q9HCM9 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM39Q9HCM9 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
TRIM39Q9HCM9 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM39Q9HCM9 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC18.49■□□□□ 0.55
TRIM39Q9HCM9 GAD2-202ENST00000376248 680 ntTSL 5 BASIC18.49■□□□□ 0.55
TRIM39Q9HCM9 AK4P3-201ENST00000418260 669 ntBASIC18.49■□□□□ 0.55
TRIM39Q9HCM9 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC18.49■□□□□ 0.55
TRIM39Q9HCM9 YBX1P2-201ENST00000489612 999 ntBASIC18.49■□□□□ 0.55
TRIM39Q9HCM9 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM39Q9HCM9 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM39Q9HCM9 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC18.49■□□□□ 0.55
TRIM39Q9HCM9 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM39Q9HCM9 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.49■□□□□ 0.55
TRIM39Q9HCM9 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM39Q9HCM9 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM39Q9HCM9 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM39Q9HCM9 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM39Q9HCM9 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM39Q9HCM9 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.49■□□□□ 0.55
TRIM39Q9HCM9 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.49■□□□□ 0.55
TRIM39Q9HCM9 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
TRIM39Q9HCM9 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM39Q9HCM9 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC18.48■□□□□ 0.55
TRIM39Q9HCM9 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM39Q9HCM9 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.48■□□□□ 0.55
TRIM39Q9HCM9 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
TRIM39Q9HCM9 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM39Q9HCM9 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM39Q9HCM9 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM39Q9HCM9 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM39Q9HCM9 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
TRIM39Q9HCM9 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM39Q9HCM9 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC18.48■□□□□ 0.55
TRIM39Q9HCM9 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC18.48■□□□□ 0.55
TRIM39Q9HCM9 DUX4L26-201ENST00000489078 1255 ntBASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms