Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC18.53■□□□□ 0.56
VPS35Q96QK1 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.53■□□□□ 0.56
VPS35Q96QK1 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC18.53■□□□□ 0.56
VPS35Q96QK1 NT5C-210ENST00000582160 860 ntTSL 2 BASIC18.53■□□□□ 0.56
VPS35Q96QK1 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC18.53■□□□□ 0.56
VPS35Q96QK1 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.53■□□□□ 0.56
VPS35Q96QK1 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS35Q96QK1 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.53■□□□□ 0.56
VPS35Q96QK1 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.53■□□□□ 0.56
VPS35Q96QK1 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS35Q96QK1 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS35Q96QK1 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS35Q96QK1 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS35Q96QK1 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS35Q96QK1 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VPS35Q96QK1 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS35Q96QK1 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC18.52■□□□□ 0.56
VPS35Q96QK1 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS35Q96QK1 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
VPS35Q96QK1 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS35Q96QK1 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS35Q96QK1 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS35Q96QK1 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC18.52■□□□□ 0.56
VPS35Q96QK1 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.52■□□□□ 0.56
VPS35Q96QK1 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
VPS35Q96QK1 AC093525.10-201ENST00000625130 1569 ntBASIC18.52■□□□□ 0.56
VPS35Q96QK1 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS35Q96QK1 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS35Q96QK1 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS35Q96QK1 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS35Q96QK1 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.52■□□□□ 0.56
VPS35Q96QK1 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS35Q96QK1 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
VPS35Q96QK1 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS35Q96QK1 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS35Q96QK1 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
VPS35Q96QK1 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC18.52■□□□□ 0.56
VPS35Q96QK1 KRT18P57-201ENST00000443599 1254 ntBASIC18.52■□□□□ 0.56
VPS35Q96QK1 AC009947.2-201ENST00000444014 672 ntBASIC18.52■□□□□ 0.56
VPS35Q96QK1 FAM210CP-201ENST00000445714 574 ntBASIC18.52■□□□□ 0.56
VPS35Q96QK1 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
VPS35Q96QK1 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC18.52■□□□□ 0.56
VPS35Q96QK1 CFL2-205ENST00000555765 632 ntTSL 2 BASIC18.52■□□□□ 0.56
VPS35Q96QK1 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC18.52■□□□□ 0.56
VPS35Q96QK1 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC18.52■□□□□ 0.56
VPS35Q96QK1 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
VPS35Q96QK1 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS35Q96QK1 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS35Q96QK1 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS35Q96QK1 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.52■□□□□ 0.56
VPS35Q96QK1 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
VPS35Q96QK1 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.52■□□□□ 0.56
VPS35Q96QK1 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.52■□□□□ 0.55
VPS35Q96QK1 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.52■□□□□ 0.55
VPS35Q96QK1 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.52■□□□□ 0.55
VPS35Q96QK1 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
VPS35Q96QK1 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.55
VPS35Q96QK1 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.51■□□□□ 0.55
VPS35Q96QK1 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS35Q96QK1 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS35Q96QK1 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS35Q96QK1 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC18.51■□□□□ 0.55
VPS35Q96QK1 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
VPS35Q96QK1 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS35Q96QK1 KRT8P7-201ENST00000533003 1432 ntBASIC18.51■□□□□ 0.55
VPS35Q96QK1 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
VPS35Q96QK1 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS35Q96QK1 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS35Q96QK1 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.51■□□□□ 0.55
VPS35Q96QK1 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS35Q96QK1 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VPS35Q96QK1 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.51■□□□□ 0.55
VPS35Q96QK1 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC18.51■□□□□ 0.55
VPS35Q96QK1 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS35Q96QK1 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.51■□□□□ 0.55
VPS35Q96QK1 ELP6-205ENST00000439305 880 ntTSL 2 BASIC18.51■□□□□ 0.55
VPS35Q96QK1 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
VPS35Q96QK1 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC18.51■□□□□ 0.55
VPS35Q96QK1 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC18.51■□□□□ 0.55
VPS35Q96QK1 RN7SL850P-201ENST00000579959 291 ntBASIC18.51■□□□□ 0.55
VPS35Q96QK1 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VPS35Q96QK1 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.51■□□□□ 0.55
VPS35Q96QK1 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS35Q96QK1 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS35Q96QK1 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC18.51■□□□□ 0.55
VPS35Q96QK1 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC18.51■□□□□ 0.55
VPS35Q96QK1 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
VPS35Q96QK1 AL357033.4-201ENST00000617703 1807 ntBASIC18.51■□□□□ 0.55
VPS35Q96QK1 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS35Q96QK1 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VPS35Q96QK1 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS35Q96QK1 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS35Q96QK1 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS35Q96QK1 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
VPS35Q96QK1 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS35Q96QK1 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC18.5■□□□□ 0.55
VPS35Q96QK1 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VPS35Q96QK1 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS35Q96QK1 HOXB1-202ENST00000577092 1414 ntBASIC18.5■□□□□ 0.55
VPS35Q96QK1 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms