Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CFAP54Q96N23 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CFAP54Q96N23 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CFAP54Q96N23 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CFAP54Q96N23 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CFAP54Q96N23 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CFAP54Q96N23 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CFAP54Q96N23 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC18.29■□□□□ 0.52
CFAP54Q96N23 GSAP-205ENST00000430584 600 ntTSL 5 BASIC18.29■□□□□ 0.52
CFAP54Q96N23 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC18.29■□□□□ 0.52
CFAP54Q96N23 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
CFAP54Q96N23 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CFAP54Q96N23 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC18.28■□□□□ 0.52
CFAP54Q96N23 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CFAP54Q96N23 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC18.28■□□□□ 0.52
CFAP54Q96N23 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CFAP54Q96N23 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CFAP54Q96N23 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CFAP54Q96N23 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CFAP54Q96N23 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CFAP54Q96N23 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
CFAP54Q96N23 MIR4469-201ENST00000583919 79 ntBASIC18.28■□□□□ 0.52
CFAP54Q96N23 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
CFAP54Q96N23 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.28■□□□□ 0.52
CFAP54Q96N23 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.28■□□□□ 0.52
CFAP54Q96N23 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC18.28■□□□□ 0.52
CFAP54Q96N23 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC18.28■□□□□ 0.52
CFAP54Q96N23 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CFAP54Q96N23 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC18.28■□□□□ 0.52
CFAP54Q96N23 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC18.28■□□□□ 0.52
CFAP54Q96N23 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC18.28■□□□□ 0.52
CFAP54Q96N23 RPS2P1-201ENST00000434010 821 ntBASIC18.28■□□□□ 0.52
CFAP54Q96N23 GAPDHP21-201ENST00000450301 1010 ntBASIC18.28■□□□□ 0.52
CFAP54Q96N23 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC18.28■□□□□ 0.52
CFAP54Q96N23 AL591684.3-201ENST00000605187 298 ntBASIC18.28■□□□□ 0.52
CFAP54Q96N23 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC18.28■□□□□ 0.52
CFAP54Q96N23 LINC01006-201ENST00000333319 2292 ntBASIC18.28■□□□□ 0.52
CFAP54Q96N23 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CFAP54Q96N23 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
CFAP54Q96N23 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CFAP54Q96N23 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CFAP54Q96N23 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC18.27■□□□□ 0.52
CFAP54Q96N23 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC18.27■□□□□ 0.52
CFAP54Q96N23 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CFAP54Q96N23 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CFAP54Q96N23 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.27■□□□□ 0.52
CFAP54Q96N23 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CFAP54Q96N23 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CFAP54Q96N23 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
CFAP54Q96N23 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CFAP54Q96N23 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CFAP54Q96N23 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
CFAP54Q96N23 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CFAP54Q96N23 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC18.27■□□□□ 0.52
CFAP54Q96N23 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CFAP54Q96N23 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC18.27■□□□□ 0.52
CFAP54Q96N23 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
CFAP54Q96N23 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CFAP54Q96N23 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CFAP54Q96N23 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
CFAP54Q96N23 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CFAP54Q96N23 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CFAP54Q96N23 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC18.26■□□□□ 0.51
CFAP54Q96N23 MEIS3P1-201ENST00000495167 958 ntBASIC18.26■□□□□ 0.51
CFAP54Q96N23 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CFAP54Q96N23 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC18.26■□□□□ 0.51
CFAP54Q96N23 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC18.26■□□□□ 0.51
CFAP54Q96N23 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC18.26■□□□□ 0.51
CFAP54Q96N23 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CFAP54Q96N23 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC18.26■□□□□ 0.51
CFAP54Q96N23 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CFAP54Q96N23 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CFAP54Q96N23 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC18.26■□□□□ 0.51
CFAP54Q96N23 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
CFAP54Q96N23 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC18.26■□□□□ 0.51
CFAP54Q96N23 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CFAP54Q96N23 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC18.26■□□□□ 0.51
CFAP54Q96N23 MIR5100-201ENST00000579544 119 ntBASIC18.26■□□□□ 0.51
CFAP54Q96N23 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC18.26■□□□□ 0.51
CFAP54Q96N23 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CFAP54Q96N23 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC18.26■□□□□ 0.51
CFAP54Q96N23 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
CFAP54Q96N23 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CFAP54Q96N23 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CFAP54Q96N23 AC012676.1-201ENST00000574705 1949 ntBASIC18.26■□□□□ 0.51
CFAP54Q96N23 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC18.26■□□□□ 0.51
CFAP54Q96N23 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CFAP54Q96N23 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
CFAP54Q96N23 AC007967.2-201ENST00000432613 625 ntBASIC18.26■□□□□ 0.51
CFAP54Q96N23 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC18.26■□□□□ 0.51
CFAP54Q96N23 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC18.26■□□□□ 0.51
CFAP54Q96N23 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC18.26■□□□□ 0.51
CFAP54Q96N23 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CFAP54Q96N23 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC18.26■□□□□ 0.51
CFAP54Q96N23 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CFAP54Q96N23 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC18.26■□□□□ 0.51
CFAP54Q96N23 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CFAP54Q96N23 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
CFAP54Q96N23 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
CFAP54Q96N23 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms