Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC14.45□□□□□ -0.1
CCDC140Q96MF4 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC14.45□□□□□ -0.1
CCDC140Q96MF4 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
CCDC140Q96MF4 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC14.45□□□□□ -0.1
CCDC140Q96MF4 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC14.45□□□□□ -0.1
CCDC140Q96MF4 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC14.45□□□□□ -0.1
CCDC140Q96MF4 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC140Q96MF4 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
CCDC140Q96MF4 AC010653.2-201ENST00000623505 997 ntBASIC14.45□□□□□ -0.1
CCDC140Q96MF4 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC140Q96MF4 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC14.45□□□□□ -0.1
CCDC140Q96MF4 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC140Q96MF4 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC14.45□□□□□ -0.1
CCDC140Q96MF4 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC14.45□□□□□ -0.1
CCDC140Q96MF4 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC140Q96MF4 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC140Q96MF4 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC140Q96MF4 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC140Q96MF4 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC140Q96MF4 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC140Q96MF4 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC140Q96MF4 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC140Q96MF4 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC140Q96MF4 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC140Q96MF4 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC14.44□□□□□ -0.1
CCDC140Q96MF4 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC140Q96MF4 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC140Q96MF4 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC140Q96MF4 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC140Q96MF4 CRAT-202ENST00000393384 973 ntTSL 2 BASIC14.44□□□□□ -0.1
CCDC140Q96MF4 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC140Q96MF4 AC087499.1-201ENST00000418141 1075 ntBASIC14.44□□□□□ -0.1
CCDC140Q96MF4 GXYLT1P6-201ENST00000456472 1187 ntBASIC14.44□□□□□ -0.1
CCDC140Q96MF4 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
CCDC140Q96MF4 AC128688.1-201ENST00000487626 519 ntBASIC14.44□□□□□ -0.1
CCDC140Q96MF4 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC14.44□□□□□ -0.1
CCDC140Q96MF4 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC140Q96MF4 CR769767.2-201ENST00000622735 460 ntBASIC14.44□□□□□ -0.1
CCDC140Q96MF4 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC140Q96MF4 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC140Q96MF4 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC14.44□□□□□ -0.1
CCDC140Q96MF4 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC140Q96MF4 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC140Q96MF4 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC140Q96MF4 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC14.44□□□□□ -0.1
CCDC140Q96MF4 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC14.44□□□□□ -0.1
CCDC140Q96MF4 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC140Q96MF4 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC140Q96MF4 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC14.44□□□□□ -0.1
CCDC140Q96MF4 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
CCDC140Q96MF4 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC140Q96MF4 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CCDC140Q96MF4 AC090164.3-201ENST00000610780 2143 ntBASIC14.44□□□□□ -0.1
CCDC140Q96MF4 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC140Q96MF4 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC140Q96MF4 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC140Q96MF4 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC14.43□□□□□ -0.1
CCDC140Q96MF4 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC140Q96MF4 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC140Q96MF4 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC140Q96MF4 AC112777.1-201ENST00000540175 1423 ntBASIC14.43□□□□□ -0.1
CCDC140Q96MF4 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC140Q96MF4 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC140Q96MF4 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC140Q96MF4 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC14.43□□□□□ -0.1
CCDC140Q96MF4 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC140Q96MF4 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC14.43□□□□□ -0.1
CCDC140Q96MF4 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC140Q96MF4 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
CCDC140Q96MF4 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC14.43□□□□□ -0.1
CCDC140Q96MF4 KRT18P41-201ENST00000518924 1277 ntBASIC14.43□□□□□ -0.1
CCDC140Q96MF4 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC14.43□□□□□ -0.1
CCDC140Q96MF4 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC14.43□□□□□ -0.1
CCDC140Q96MF4 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC14.43□□□□□ -0.1
CCDC140Q96MF4 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC14.43□□□□□ -0.1
CCDC140Q96MF4 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC14.43□□□□□ -0.1
CCDC140Q96MF4 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC14.43□□□□□ -0.1
CCDC140Q96MF4 FAM87A-204ENST00000613235 858 ntBASIC14.43□□□□□ -0.1
CCDC140Q96MF4 MYC-208ENST00000641036 567 ntBASIC14.43□□□□□ -0.1
CCDC140Q96MF4 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC140Q96MF4 AC034236.2-201ENST00000606662 1610 ntBASIC14.43□□□□□ -0.1
CCDC140Q96MF4 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC140Q96MF4 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC140Q96MF4 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
CCDC140Q96MF4 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC140Q96MF4 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC140Q96MF4 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC14.43□□□□□ -0.1
CCDC140Q96MF4 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC140Q96MF4 AC073592.3-201ENST00000625118 1834 ntBASIC14.43□□□□□ -0.1
CCDC140Q96MF4 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
CCDC140Q96MF4 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC14.43□□□□□ -0.1
CCDC140Q96MF4 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC140Q96MF4 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC140Q96MF4 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC140Q96MF4 RNF165-205ENST00000588679 2904 ntBASIC14.42□□□□□ -0.1
CCDC140Q96MF4 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
CCDC140Q96MF4 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
CCDC140Q96MF4 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC14.42□□□□□ -0.1
CCDC140Q96MF4 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC140Q96MF4 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms