Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 AP001271.2-201ENST00000624018 1556 ntBASIC18.92■□□□□ 0.62
TTC28Q96AY4 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
TTC28Q96AY4 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TTC28Q96AY4 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
TTC28Q96AY4 AQP6-203ENST00000551733 849 ntTSL 3 BASIC18.92■□□□□ 0.62
TTC28Q96AY4 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC18.92■□□□□ 0.62
TTC28Q96AY4 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
TTC28Q96AY4 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
TTC28Q96AY4 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TTC28Q96AY4 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TTC28Q96AY4 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TTC28Q96AY4 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
TTC28Q96AY4 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TTC28Q96AY4 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TTC28Q96AY4 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC18.92■□□□□ 0.62
TTC28Q96AY4 CCND1-203ENST00000536559 553 ntTSL 3 BASIC18.92■□□□□ 0.62
TTC28Q96AY4 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
TTC28Q96AY4 RPS29-206ENST00000557111 488 ntTSL 2 BASIC18.92■□□□□ 0.62
TTC28Q96AY4 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC18.92■□□□□ 0.62
TTC28Q96AY4 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TTC28Q96AY4 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TTC28Q96AY4 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC18.91■□□□□ 0.62
TTC28Q96AY4 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC18.91■□□□□ 0.62
TTC28Q96AY4 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
TTC28Q96AY4 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TTC28Q96AY4 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
TTC28Q96AY4 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TTC28Q96AY4 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TTC28Q96AY4 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TTC28Q96AY4 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC18.91■□□□□ 0.62
TTC28Q96AY4 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
TTC28Q96AY4 AC004449.1-201ENST00000564240 433 ntBASIC18.91■□□□□ 0.62
TTC28Q96AY4 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
TTC28Q96AY4 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC18.91■□□□□ 0.62
TTC28Q96AY4 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC18.91■□□□□ 0.62
TTC28Q96AY4 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
TTC28Q96AY4 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TTC28Q96AY4 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
TTC28Q96AY4 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TTC28Q96AY4 PMS2P4-201ENST00000412466 1052 ntBASIC18.91■□□□□ 0.62
TTC28Q96AY4 KRT18P27-201ENST00000427733 1299 ntBASIC18.91■□□□□ 0.62
TTC28Q96AY4 DANCR-204ENST00000444958 709 ntTSL 3 BASIC18.91■□□□□ 0.62
TTC28Q96AY4 POLD4-211ENST00000539074 714 ntTSL 3 BASIC18.91■□□□□ 0.62
TTC28Q96AY4 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TTC28Q96AY4 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC18.9■□□□□ 0.62
TTC28Q96AY4 CEND1P1-201ENST00000451006 455 ntBASIC18.9■□□□□ 0.62
TTC28Q96AY4 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TTC28Q96AY4 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC18.9■□□□□ 0.62
TTC28Q96AY4 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC18.9■□□□□ 0.62
TTC28Q96AY4 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC18.9■□□□□ 0.62
TTC28Q96AY4 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC18.9■□□□□ 0.62
TTC28Q96AY4 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
TTC28Q96AY4 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TTC28Q96AY4 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.9■□□□□ 0.62
TTC28Q96AY4 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TTC28Q96AY4 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TTC28Q96AY4 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC18.9■□□□□ 0.62
TTC28Q96AY4 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TTC28Q96AY4 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
TTC28Q96AY4 CECR7-204ENST00000609932 568 ntTSL 2 BASIC18.9■□□□□ 0.62
TTC28Q96AY4 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.62
TTC28Q96AY4 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
TTC28Q96AY4 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC18.89■□□□□ 0.62
TTC28Q96AY4 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TTC28Q96AY4 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
TTC28Q96AY4 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC18.89■□□□□ 0.61
TTC28Q96AY4 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC18.89■□□□□ 0.61
TTC28Q96AY4 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TTC28Q96AY4 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TTC28Q96AY4 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TTC28Q96AY4 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC18.89■□□□□ 0.61
TTC28Q96AY4 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC18.89■□□□□ 0.61
TTC28Q96AY4 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC18.89■□□□□ 0.61
TTC28Q96AY4 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TTC28Q96AY4 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC18.89■□□□□ 0.61
TTC28Q96AY4 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC18.89■□□□□ 0.61
TTC28Q96AY4 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC18.89■□□□□ 0.61
TTC28Q96AY4 AC018845.2-201ENST00000568326 409 ntBASIC18.89■□□□□ 0.61
TTC28Q96AY4 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
TTC28Q96AY4 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC18.89■□□□□ 0.61
TTC28Q96AY4 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TTC28Q96AY4 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TTC28Q96AY4 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TTC28Q96AY4 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC18.88■□□□□ 0.61
TTC28Q96AY4 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TTC28Q96AY4 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TTC28Q96AY4 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC18.88■□□□□ 0.61
TTC28Q96AY4 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
TTC28Q96AY4 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
TTC28Q96AY4 STOM-202ENST00000347359 870 ntTSL 2 BASIC18.88■□□□□ 0.61
TTC28Q96AY4 ELK2BP-201ENST00000415014 1224 ntBASIC18.88■□□□□ 0.61
TTC28Q96AY4 AP005018.1-201ENST00000525475 301 ntBASIC18.88■□□□□ 0.61
TTC28Q96AY4 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC18.88■□□□□ 0.61
TTC28Q96AY4 AC104417.2-201ENST00000562989 1793 ntBASIC18.88■□□□□ 0.61
TTC28Q96AY4 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC18.88■□□□□ 0.61
TTC28Q96AY4 INTS4P1-201ENST00000438455 1935 ntBASIC18.88■□□□□ 0.61
TTC28Q96AY4 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC18.88■□□□□ 0.61
TTC28Q96AY4 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC18.88■□□□□ 0.61
TTC28Q96AY4 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC18.88■□□□□ 0.61
TTC28Q96AY4 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms