Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHROOM3Q8TF72 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC19.04■□□□□ 0.64
SHROOM3Q8TF72 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHROOM3Q8TF72 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHROOM3Q8TF72 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHROOM3Q8TF72 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
SHROOM3Q8TF72 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHROOM3Q8TF72 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHROOM3Q8TF72 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SHROOM3Q8TF72 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC19.04■□□□□ 0.64
SHROOM3Q8TF72 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC19.04■□□□□ 0.64
SHROOM3Q8TF72 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SHROOM3Q8TF72 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHROOM3Q8TF72 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SHROOM3Q8TF72 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC19.04■□□□□ 0.64
SHROOM3Q8TF72 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SHROOM3Q8TF72 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHROOM3Q8TF72 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
SHROOM3Q8TF72 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
SHROOM3Q8TF72 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHROOM3Q8TF72 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHROOM3Q8TF72 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC19.04■□□□□ 0.64
SHROOM3Q8TF72 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC19.04■□□□□ 0.64
SHROOM3Q8TF72 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHROOM3Q8TF72 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHROOM3Q8TF72 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHROOM3Q8TF72 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SHROOM3Q8TF72 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC19.04■□□□□ 0.64
SHROOM3Q8TF72 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHROOM3Q8TF72 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SHROOM3Q8TF72 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
SHROOM3Q8TF72 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SHROOM3Q8TF72 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
SHROOM3Q8TF72 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
SHROOM3Q8TF72 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC19.03■□□□□ 0.64
SHROOM3Q8TF72 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.03■□□□□ 0.64
SHROOM3Q8TF72 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SHROOM3Q8TF72 AL138781.2-201ENST00000617896 1843 ntBASIC19.03■□□□□ 0.64
SHROOM3Q8TF72 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SHROOM3Q8TF72 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SHROOM3Q8TF72 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SHROOM3Q8TF72 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC19.03■□□□□ 0.64
SHROOM3Q8TF72 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SHROOM3Q8TF72 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC19.03■□□□□ 0.64
SHROOM3Q8TF72 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC19.03■□□□□ 0.64
SHROOM3Q8TF72 RNF165-205ENST00000588679 2904 ntBASIC19.03■□□□□ 0.64
SHROOM3Q8TF72 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SHROOM3Q8TF72 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SHROOM3Q8TF72 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SHROOM3Q8TF72 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SHROOM3Q8TF72 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SHROOM3Q8TF72 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
SHROOM3Q8TF72 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SHROOM3Q8TF72 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
SHROOM3Q8TF72 KRT8P50-201ENST00000562022 1438 ntBASIC19.03■□□□□ 0.64
SHROOM3Q8TF72 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SHROOM3Q8TF72 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
SHROOM3Q8TF72 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SHROOM3Q8TF72 AL023284.2-201ENST00000405850 579 ntBASIC19.02■□□□□ 0.64
SHROOM3Q8TF72 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC19.02■□□□□ 0.64
SHROOM3Q8TF72 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SHROOM3Q8TF72 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SHROOM3Q8TF72 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC19.02■□□□□ 0.64
SHROOM3Q8TF72 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
SHROOM3Q8TF72 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SHROOM3Q8TF72 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC19.02■□□□□ 0.64
SHROOM3Q8TF72 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC19.02■□□□□ 0.64
SHROOM3Q8TF72 AL357033.4-201ENST00000617703 1807 ntBASIC19.02■□□□□ 0.64
SHROOM3Q8TF72 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC19.02■□□□□ 0.64
SHROOM3Q8TF72 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SHROOM3Q8TF72 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
SHROOM3Q8TF72 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SHROOM3Q8TF72 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SHROOM3Q8TF72 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SHROOM3Q8TF72 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SHROOM3Q8TF72 AC009113.1-201ENST00000570267 2443 ntBASIC19.02■□□□□ 0.64
SHROOM3Q8TF72 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC19.02■□□□□ 0.64
SHROOM3Q8TF72 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
SHROOM3Q8TF72 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SHROOM3Q8TF72 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SHROOM3Q8TF72 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SHROOM3Q8TF72 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC19.02■□□□□ 0.64
SHROOM3Q8TF72 PHB2-202ENST00000440277 996 ntTSL 5 BASIC19.02■□□□□ 0.64
SHROOM3Q8TF72 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SHROOM3Q8TF72 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC19.02■□□□□ 0.64
SHROOM3Q8TF72 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
SHROOM3Q8TF72 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC19.02■□□□□ 0.64
SHROOM3Q8TF72 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC19.02■□□□□ 0.64
SHROOM3Q8TF72 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC19.02■□□□□ 0.64
SHROOM3Q8TF72 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.63
SHROOM3Q8TF72 AL109659.2-201ENST00000606809 1674 ntBASIC19.02■□□□□ 0.63
SHROOM3Q8TF72 KRT18P22-201ENST00000402024 1347 ntBASIC19.02■□□□□ 0.63
SHROOM3Q8TF72 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
SHROOM3Q8TF72 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC19.01■□□□□ 0.63
SHROOM3Q8TF72 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC19.01■□□□□ 0.63
SHROOM3Q8TF72 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHROOM3Q8TF72 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHROOM3Q8TF72 EFTUD1P1-204ENST00000560401 1798 ntBASIC19.01■□□□□ 0.63
SHROOM3Q8TF72 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SHROOM3Q8TF72 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms