Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00643Q86TS7 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC11.69□□□□□ -0.54
LINC00643Q86TS7 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00643Q86TS7 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
LINC00643Q86TS7 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC11.69□□□□□ -0.54
LINC00643Q86TS7 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC11.69□□□□□ -0.54
LINC00643Q86TS7 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00643Q86TS7 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC11.69□□□□□ -0.54
LINC00643Q86TS7 GCK-209ENST00000616242 2260 ntTSL 5 BASIC11.69□□□□□ -0.54
LINC00643Q86TS7 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
LINC00643Q86TS7 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00643Q86TS7 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
LINC00643Q86TS7 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC11.69□□□□□ -0.54
LINC00643Q86TS7 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00643Q86TS7 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00643Q86TS7 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00643Q86TS7 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC11.69□□□□□ -0.54
LINC00643Q86TS7 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00643Q86TS7 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00643Q86TS7 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00643Q86TS7 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC11.69□□□□□ -0.54
LINC00643Q86TS7 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00643Q86TS7 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00643Q86TS7 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00643Q86TS7 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC11.69□□□□□ -0.54
LINC00643Q86TS7 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00643Q86TS7 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC11.69□□□□□ -0.54
LINC00643Q86TS7 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
LINC00643Q86TS7 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00643Q86TS7 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC11.69□□□□□ -0.54
LINC00643Q86TS7 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC11.69□□□□□ -0.54
LINC00643Q86TS7 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC11.69□□□□□ -0.54
LINC00643Q86TS7 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 AC087741.3-201ENST00000624270 1347 ntBASIC11.68□□□□□ -0.54
LINC00643Q86TS7 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 AC010141.3-201ENST00000456659 717 ntBASIC11.68□□□□□ -0.54
LINC00643Q86TS7 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 MYB-201ENST00000316528 3571 ntTSL 5 BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 MYB-241ENST00000616088 3573 ntTSL 5 BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00643Q86TS7 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 PCDHA14-201ENST00000506751 2298 ntBASIC11.67□□□□□ -0.54
LINC00643Q86TS7 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 AC005703.6-201ENST00000623265 1329 ntBASIC11.67□□□□□ -0.54
LINC00643Q86TS7 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC11.67□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms