Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC21.22■□□□□ 0.99
CCNA1P78396 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCNA1P78396 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCNA1P78396 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CCNA1P78396 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CCNA1P78396 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCNA1P78396 KRT16P4-201ENST00000453883 522 ntBASIC21.22■□□□□ 0.99
CCNA1P78396 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC21.22■□□□□ 0.99
CCNA1P78396 FICD-205ENST00000552758 603 ntTSL 2 BASIC21.22■□□□□ 0.99
CCNA1P78396 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
CCNA1P78396 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCNA1P78396 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC21.22■□□□□ 0.99
CCNA1P78396 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC21.22■□□□□ 0.99
CCNA1P78396 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC21.22■□□□□ 0.99
CCNA1P78396 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CCNA1P78396 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CCNA1P78396 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC21.22■□□□□ 0.99
CCNA1P78396 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCNA1P78396 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC21.22■□□□□ 0.99
CCNA1P78396 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCNA1P78396 AL157384.1-201ENST00000445995 2473 ntBASIC21.22■□□□□ 0.99
CCNA1P78396 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCNA1P78396 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCNA1P78396 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
CCNA1P78396 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CCNA1P78396 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCNA1P78396 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
CCNA1P78396 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC21.21■□□□□ 0.99
CCNA1P78396 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC21.21■□□□□ 0.99
CCNA1P78396 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CCNA1P78396 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCNA1P78396 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCNA1P78396 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CCNA1P78396 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC21.21■□□□□ 0.99
CCNA1P78396 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC21.21■□□□□ 0.99
CCNA1P78396 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCNA1P78396 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCNA1P78396 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC21.21■□□□□ 0.99
CCNA1P78396 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CCNA1P78396 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC21.21■□□□□ 0.99
CCNA1P78396 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC21.21■□□□□ 0.99
CCNA1P78396 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCNA1P78396 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CCNA1P78396 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC21.21■□□□□ 0.99
CCNA1P78396 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC21.21■□□□□ 0.99
CCNA1P78396 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC21.21■□□□□ 0.99
CCNA1P78396 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC21.21■□□□□ 0.99
CCNA1P78396 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
CCNA1P78396 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
CCNA1P78396 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CCNA1P78396 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CCNA1P78396 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCNA1P78396 AL353692.3-201ENST00000407031 1396 ntBASIC21.21■□□□□ 0.99
CCNA1P78396 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
CCNA1P78396 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CCNA1P78396 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCNA1P78396 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
CCNA1P78396 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC21.2■□□□□ 0.98
CCNA1P78396 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.2■□□□□ 0.98
CCNA1P78396 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
CCNA1P78396 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCNA1P78396 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
CCNA1P78396 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
CCNA1P78396 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC21.2■□□□□ 0.98
CCNA1P78396 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCNA1P78396 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
CCNA1P78396 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC21.2■□□□□ 0.98
CCNA1P78396 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCNA1P78396 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCNA1P78396 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC21.2■□□□□ 0.98
CCNA1P78396 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC21.2■□□□□ 0.98
CCNA1P78396 AC079776.4-201ENST00000511039 504 ntBASIC21.2■□□□□ 0.98
CCNA1P78396 ABR-204ENST00000543210 1049 ntTSL 2 BASIC21.2■□□□□ 0.98
CCNA1P78396 CALM1-205ENST00000553542 877 ntTSL 5 BASIC21.2■□□□□ 0.98
CCNA1P78396 ABR-217ENST00000572441 563 ntTSL 4 BASIC21.2■□□□□ 0.98
CCNA1P78396 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC21.2■□□□□ 0.98
CCNA1P78396 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
CCNA1P78396 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CCNA1P78396 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCNA1P78396 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CCNA1P78396 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC21.2■□□□□ 0.98
CCNA1P78396 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC21.2■□□□□ 0.98
CCNA1P78396 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
CCNA1P78396 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCNA1P78396 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.19■□□□□ 0.98
CCNA1P78396 NSUN5P1-202ENST00000421140 1535 ntBASIC21.19■□□□□ 0.98
CCNA1P78396 NSUN5P2-203ENST00000457352 1529 ntBASIC21.19■□□□□ 0.98
CCNA1P78396 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCNA1P78396 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
CCNA1P78396 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC21.19■□□□□ 0.98
CCNA1P78396 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CCNA1P78396 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCNA1P78396 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CCNA1P78396 AC011840.4-201ENST00000578471 627 ntBASIC21.19■□□□□ 0.98
CCNA1P78396 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC21.19■□□□□ 0.98
CCNA1P78396 VPS51-217ENST00000639871 243 ntTSL 5 BASIC21.19■□□□□ 0.98
CCNA1P78396 AC068587.9-201ENST00000641814 219 ntBASIC21.19■□□□□ 0.98
CCNA1P78396 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCNA1P78396 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC21.19■□□□□ 0.98
CCNA1P78396 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms