Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AL512353.2-201ENST00000448759 1962 ntBASIC25.83■■□□□ 1.73
MSH6P52701 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC25.83■■□□□ 1.73
MSH6P52701 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC25.83■■□□□ 1.73
MSH6P52701 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC25.83■■□□□ 1.73
MSH6P52701 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC25.83■■□□□ 1.73
MSH6P52701 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC25.83■■□□□ 1.72
MSH6P52701 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
MSH6P52701 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
MSH6P52701 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC25.82■■□□□ 1.72
MSH6P52701 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC25.82■■□□□ 1.72
MSH6P52701 AC112482.1-201ENST00000492080 688 ntBASIC25.82■■□□□ 1.72
MSH6P52701 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC25.82■■□□□ 1.72
MSH6P52701 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC25.82■■□□□ 1.72
MSH6P52701 RPS15-207ENST00000591032 550 ntTSL 3 BASIC25.82■■□□□ 1.72
MSH6P52701 MTDHP3-201ENST00000594186 672 ntBASIC25.82■■□□□ 1.72
MSH6P52701 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC25.82■■□□□ 1.72
MSH6P52701 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
MSH6P52701 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
MSH6P52701 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC25.82■■□□□ 1.72
MSH6P52701 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
MSH6P52701 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC25.82■■□□□ 1.72
MSH6P52701 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
MSH6P52701 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC25.82■■□□□ 1.72
MSH6P52701 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
MSH6P52701 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC25.82■■□□□ 1.72
MSH6P52701 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC25.82■■□□□ 1.72
MSH6P52701 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC25.82■■□□□ 1.72
MSH6P52701 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
MSH6P52701 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC25.82■■□□□ 1.72
MSH6P52701 AC040169.1-201ENST00000565382 521 ntBASIC25.82■■□□□ 1.72
MSH6P52701 MIR3197-201ENST00000582241 73 ntBASIC25.82■■□□□ 1.72
MSH6P52701 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
MSH6P52701 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC25.82■■□□□ 1.72
MSH6P52701 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC25.82■■□□□ 1.72
MSH6P52701 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC25.81■■□□□ 1.72
MSH6P52701 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
MSH6P52701 DET1-207ENST00000564406 2315 ntTSL 2 BASIC25.81■■□□□ 1.72
MSH6P52701 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
MSH6P52701 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC25.81■■□□□ 1.72
MSH6P52701 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC25.81■■□□□ 1.72
MSH6P52701 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
MSH6P52701 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC25.81■■□□□ 1.72
MSH6P52701 KRT18P3-201ENST00000451602 1288 ntBASIC25.81■■□□□ 1.72
MSH6P52701 CFL1-212ENST00000531413 636 ntTSL 3 BASIC25.81■■□□□ 1.72
MSH6P52701 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC25.81■■□□□ 1.72
MSH6P52701 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
MSH6P52701 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC25.8■■□□□ 1.72
MSH6P52701 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC25.8■■□□□ 1.72
MSH6P52701 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC25.8■■□□□ 1.72
MSH6P52701 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
MSH6P52701 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC25.8■■□□□ 1.72
MSH6P52701 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC25.8■■□□□ 1.72
MSH6P52701 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
MSH6P52701 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
MSH6P52701 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC25.8■■□□□ 1.72
MSH6P52701 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC25.8■■□□□ 1.72
MSH6P52701 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC25.8■■□□□ 1.72
MSH6P52701 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC25.8■■□□□ 1.72
MSH6P52701 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
MSH6P52701 REEP1-209ENST00000541910 969 ntTSL 2 BASIC25.8■■□□□ 1.72
MSH6P52701 NAT14-202ENST00000587400 416 ntTSL 5 BASIC25.8■■□□□ 1.72
MSH6P52701 Z83851.2-201ENST00000609564 659 ntBASIC25.8■■□□□ 1.72
MSH6P52701 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
MSH6P52701 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
MSH6P52701 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
MSH6P52701 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC25.79■■□□□ 1.72
MSH6P52701 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC25.79■■□□□ 1.72
MSH6P52701 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC25.79■■□□□ 1.72
MSH6P52701 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
MSH6P52701 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC25.79■■□□□ 1.72
MSH6P52701 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
MSH6P52701 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC25.79■■□□□ 1.72
MSH6P52701 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
MSH6P52701 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC25.79■■□□□ 1.72
MSH6P52701 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC25.79■■□□□ 1.72
MSH6P52701 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC25.79■■□□□ 1.72
MSH6P52701 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC25.79■■□□□ 1.72
MSH6P52701 AP001269.4-201ENST00000609611 512 ntBASIC25.79■■□□□ 1.72
MSH6P52701 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
MSH6P52701 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
MSH6P52701 AC034236.2-201ENST00000606662 1610 ntBASIC25.78■■□□□ 1.72
MSH6P52701 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC25.78■■□□□ 1.72
MSH6P52701 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC25.78■■□□□ 1.72
MSH6P52701 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
MSH6P52701 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
MSH6P52701 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
MSH6P52701 RCN1P2-201ENST00000398357 915 ntBASIC25.78■■□□□ 1.72
MSH6P52701 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
MSH6P52701 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC25.78■■□□□ 1.72
MSH6P52701 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC25.78■■□□□ 1.72
MSH6P52701 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC25.78■■□□□ 1.72
MSH6P52701 PAM16-208ENST00000573553 722 ntTSL 2 BASIC25.78■■□□□ 1.72
MSH6P52701 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC25.78■■□□□ 1.72
MSH6P52701 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
MSH6P52701 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC25.78■■□□□ 1.72
MSH6P52701 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC25.78■■□□□ 1.72
MSH6P52701 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC25.78■■□□□ 1.72
MSH6P52701 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC25.78■■□□□ 1.72
MSH6P52701 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
MSH6P52701 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms