Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC21.61■■□□□ 1.05
CTCFP49711 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CTCFP49711 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CTCFP49711 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC21.61■■□□□ 1.05
CTCFP49711 AC011840.4-201ENST00000578471 627 ntBASIC21.61■■□□□ 1.05
CTCFP49711 BNIP3P18-201ENST00000593976 575 ntBASIC21.61■■□□□ 1.05
CTCFP49711 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC21.61■■□□□ 1.05
CTCFP49711 AC106028.4-201ENST00000614509 607 ntBASIC21.61■■□□□ 1.05
CTCFP49711 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CTCFP49711 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CTCFP49711 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CTCFP49711 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CTCFP49711 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CTCFP49711 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
CTCFP49711 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CTCFP49711 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC21.6■■□□□ 1.05
CTCFP49711 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC21.6■■□□□ 1.05
CTCFP49711 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CTCFP49711 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CTCFP49711 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
CTCFP49711 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC21.6■■□□□ 1.05
CTCFP49711 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
CTCFP49711 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CTCFP49711 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
CTCFP49711 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC21.6■■□□□ 1.05
CTCFP49711 RNA5SP415-201ENST00000517246 115 ntBASIC21.6■■□□□ 1.05
CTCFP49711 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC21.6■■□□□ 1.05
CTCFP49711 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CTCFP49711 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CTCFP49711 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC21.6■■□□□ 1.05
CTCFP49711 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CTCFP49711 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CTCFP49711 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC21.59■■□□□ 1.05
CTCFP49711 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
CTCFP49711 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
CTCFP49711 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC21.59■■□□□ 1.05
CTCFP49711 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC21.59■■□□□ 1.05
CTCFP49711 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CTCFP49711 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
CTCFP49711 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC21.59■■□□□ 1.05
CTCFP49711 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC21.59■■□□□ 1.05
CTCFP49711 AL023284.2-201ENST00000405850 579 ntBASIC21.59■■□□□ 1.05
CTCFP49711 AC092474.2-201ENST00000424288 719 ntBASIC21.59■■□□□ 1.05
CTCFP49711 AC092910.1-201ENST00000482027 1129 ntBASIC21.59■■□□□ 1.05
CTCFP49711 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC21.59■■□□□ 1.05
CTCFP49711 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
CTCFP49711 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC21.59■■□□□ 1.05
CTCFP49711 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC21.59■■□□□ 1.05
CTCFP49711 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CTCFP49711 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC21.59■■□□□ 1.05
CTCFP49711 PAN3-AS1-201ENST00000563843 1351 ntBASIC21.59■■□□□ 1.05
CTCFP49711 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CTCFP49711 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
CTCFP49711 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CTCFP49711 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.05
CTCFP49711 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CTCFP49711 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC21.58■■□□□ 1.05
CTCFP49711 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
CTCFP49711 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CTCFP49711 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CTCFP49711 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CTCFP49711 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC21.58■■□□□ 1.05
CTCFP49711 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC21.58■■□□□ 1.05
CTCFP49711 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CTCFP49711 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CTCFP49711 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
CTCFP49711 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC21.58■■□□□ 1.05
CTCFP49711 THAP5-204ENST00000438865 868 ntTSL 2 BASIC21.58■■□□□ 1.05
CTCFP49711 MTDHP3-201ENST00000594186 672 ntBASIC21.58■■□□□ 1.05
CTCFP49711 AC114341.1-201ENST00000618070 349 ntBASIC21.58■■□□□ 1.05
CTCFP49711 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
CTCFP49711 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CTCFP49711 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
CTCFP49711 HLA-J-201ENST00000462773 1622 ntBASIC21.58■■□□□ 1.04
CTCFP49711 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.04
CTCFP49711 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
CTCFP49711 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.04
CTCFP49711 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CTCFP49711 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CTCFP49711 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
CTCFP49711 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CTCFP49711 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
CTCFP49711 RBM17P3-201ENST00000417687 1192 ntBASIC21.57■■□□□ 1.04
CTCFP49711 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC21.57■■□□□ 1.04
CTCFP49711 CFL1-202ENST00000524553 860 ntTSL 2 BASIC21.57■■□□□ 1.04
CTCFP49711 GREM1-201ENST00000560677 623 ntTSL 4 BASIC21.57■■□□□ 1.04
CTCFP49711 AP002472.1-201ENST00000577490 586 ntBASIC21.57■■□□□ 1.04
CTCFP49711 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC21.57■■□□□ 1.04
CTCFP49711 AP001269.4-201ENST00000609611 512 ntBASIC21.57■■□□□ 1.04
CTCFP49711 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CTCFP49711 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC21.57■■□□□ 1.04
CTCFP49711 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CTCFP49711 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
CTCFP49711 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CTCFP49711 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
CTCFP49711 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CTCFP49711 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CTCFP49711 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC21.57■■□□□ 1.04
CTCFP49711 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC21.56■■□□□ 1.04
CTCFP49711 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms