Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
HOXA9P31269 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HOXA9P31269 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXA9P31269 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.42■□□□□ 0.7
HOXA9P31269 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HOXA9P31269 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HOXA9P31269 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC19.42■□□□□ 0.7
HOXA9P31269 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXA9P31269 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC19.42■□□□□ 0.7
HOXA9P31269 EMBP1-201ENST00000458200 901 ntBASIC19.42■□□□□ 0.7
HOXA9P31269 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC19.42■□□□□ 0.7
HOXA9P31269 PPOX-214ENST00000535223 664 ntTSL 3 BASIC19.42■□□□□ 0.7
HOXA9P31269 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HOXA9P31269 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC19.42■□□□□ 0.7
HOXA9P31269 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC19.42■□□□□ 0.7
HOXA9P31269 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXA9P31269 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.42■□□□□ 0.7
HOXA9P31269 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC19.42■□□□□ 0.7
HOXA9P31269 AC007952.6-201ENST00000573168 2673 ntBASIC19.42■□□□□ 0.7
HOXA9P31269 AC003957.1-201ENST00000625108 2673 ntBASIC19.42■□□□□ 0.7
HOXA9P31269 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXA9P31269 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXA9P31269 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXA9P31269 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC19.42■□□□□ 0.7
HOXA9P31269 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HOXA9P31269 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXA9P31269 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.41■□□□□ 0.7
HOXA9P31269 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
HOXA9P31269 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC19.41■□□□□ 0.7
HOXA9P31269 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC19.41■□□□□ 0.7
HOXA9P31269 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXA9P31269 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC19.41■□□□□ 0.7
HOXA9P31269 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HOXA9P31269 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXA9P31269 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXA9P31269 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXA9P31269 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXA9P31269 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXA9P31269 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HOXA9P31269 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXA9P31269 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC19.41■□□□□ 0.7
HOXA9P31269 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC19.41■□□□□ 0.7
HOXA9P31269 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC19.41■□□□□ 0.7
HOXA9P31269 GUSBP12-201ENST00000513727 720 ntBASIC19.41■□□□□ 0.7
HOXA9P31269 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXA9P31269 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC19.41■□□□□ 0.7
HOXA9P31269 AC104692.2-201ENST00000603054 253 ntBASIC19.41■□□□□ 0.7
HOXA9P31269 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXA9P31269 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC19.41■□□□□ 0.7
HOXA9P31269 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
HOXA9P31269 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
HOXA9P31269 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXA9P31269 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXA9P31269 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXA9P31269 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXA9P31269 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC19.4■□□□□ 0.7
HOXA9P31269 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXA9P31269 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
HOXA9P31269 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXA9P31269 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXA9P31269 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.4■□□□□ 0.7
HOXA9P31269 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXA9P31269 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HOXA9P31269 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXA9P31269 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXA9P31269 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC19.4■□□□□ 0.7
HOXA9P31269 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC19.4■□□□□ 0.7
HOXA9P31269 RN7SL606P-201ENST00000472779 293 ntBASIC19.4■□□□□ 0.7
HOXA9P31269 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC19.4■□□□□ 0.7
HOXA9P31269 AL160237.2-201ENST00000556165 472 ntBASIC19.4■□□□□ 0.7
HOXA9P31269 AC074051.2-201ENST00000565115 352 ntBASIC19.4■□□□□ 0.7
HOXA9P31269 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC19.4■□□□□ 0.7
HOXA9P31269 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC19.4■□□□□ 0.7
HOXA9P31269 AL592071.1-201ENST00000611956 408 ntBASIC19.4■□□□□ 0.7
HOXA9P31269 AL031008.1-201ENST00000619963 541 ntBASIC19.4■□□□□ 0.7
HOXA9P31269 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC19.4■□□□□ 0.7
HOXA9P31269 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXA9P31269 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC19.4■□□□□ 0.7
HOXA9P31269 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXA9P31269 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXA9P31269 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC19.4■□□□□ 0.7
HOXA9P31269 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXA9P31269 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXA9P31269 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXA9P31269 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
HOXA9P31269 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.39■□□□□ 0.7
HOXA9P31269 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
HOXA9P31269 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
HOXA9P31269 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC19.39■□□□□ 0.7
HOXA9P31269 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
HOXA9P31269 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.7
HOXA9P31269 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC19.39■□□□□ 0.7
HOXA9P31269 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.39■□□□□ 0.7
HOXA9P31269 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXA9P31269 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXA9P31269 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXA9P31269 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC19.39■□□□□ 0.69
HOXA9P31269 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC19.39■□□□□ 0.69
HOXA9P31269 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
HOXA9P31269 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms